Providencia heimbachae: NCTC12003_03086
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Entry
NCTC12003_03086 CDS
T05509
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
phei
Providencia heimbachae
Pathway
phei03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC12003_03086 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phei03400
]
NCTC12003_03086 (recB)
Enzymes [BR:
phei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC12003_03086 (recB)
DNA repair and recombination proteins [BR:
phei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC12003_03086 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
SQH14414
LinkDB
All DBs
Position
1:complement(3365226..3368834)
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AA seq
1202 aa
AA seq
DB search
MNKVQMSSQLLNAFSLPLQGQRLIEASAGTGKTYTIGILYLRLLLGLGGENAFPRPLSVE
EILVVTFTEAATNELRGRIRERIHEMRLACLRNGVGFESKPEYLELLKELPEQEQRTFAS
NWLLAAERQMDEAAIYTIHGFCQRMLVHNAFESGILFEQTMIQDEFPIQKQACADFWRRH
FYPLDYSMTKVVQSLWNGPEALLSEIRPFLQGDIPVIINQPKQQETLEERHHRLISLIEA
VKSSWLLSVADFEKIITDSDVDKRSYSARFLPNWLVKITEWAEERTEDYQLPKDLMRFSQ
TVLHEKSKTGRGPEHAVFRQIEELLAQSLTIKDLVIPLAITQVRQTIADEKYSRGEMGFD
DLLTRLDNALKQEGGKFLADAICQRFPVAMIDEFQDTDPQQYRIFQRIYQGVDNSALLFI
GDPKQAIYAFRGADIFTYIEAKKQVSAHYTLETNYRSSKNMVEAINRLFSHCDSPFIFEQ
IPFQPVNFAPNNIEKKLYHDGVEVNALTFWQLDAEAVSVAEYEQAIARQCAAKIAHYLQG
GLQGDTYFLNKNENIPVAASDITVLVRSRREAVLIRDALNQLNIPSVFQSNRESVFSTQE
ARDLLWLLQAVLTPEKERILRSALATGILGLNAKDIDEFNYNEKAWEKLVDEFARYAAIW
HKQGVLPMLRILMAERHIAETLLSGLEGERRLMDIMHMGELLQEMSLQLEGEHTLTRWLA
QQIAHPDHQSDAQQMRLESDRHLVQISTIHKSKGLEYKIVWLPFASNFLPQSKGLYHDRD
DYGSRLDLNDEDEYVALADEERLAEDLRLLYVALTRAIYHCSVGVAPLIKGNRKKSGETD
LHLSALGYLLQQGQAGDNALLNKMLAEISNETINVNIIDTPEFERLSIAQNDHNLLTARG
ITRHFDDRWRVTSYSGLSYSTSYIDDGQAISAIQFANSLAPKMDVEVSNDVEQQETDEVA
LTPHQFPKGASPGTFLHSLMEEINFSEEPSLEWLIEQLESSGFDSRWALMLQDWLTSIVS
APLSDDGLCLSVLQAEDMLDEMQFYLPIESLLDAKDVDRITHQYDPLSIQCPPLNFEKVQ
GILKGFIDLTFIWKGKFYLLDYKSNYLGEDASCYTPKAMSEAMIDHRYDLQYQLYSLALH
RYLKQRIPNYHYETHFGGVYYLFLRGIDSAESKNGIFFYRPALNFIEEFDQLFRDAQSKE
QL
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagtgcagatgagttcccaattgctaaatgctttttctttgcctttacaagga
caaagattaatagaggcgtcagcaggtacaggtaaaacttacactatagggatcctttat
ctgcgcctcttattaggtttagggggtgaaaatgcattccctagaccgctcagtgttgaa
gaaattttagttgtgacatttaccgaagctgcaactaatgagttacgcggacgtattcgt
gagcgtattcatgaaatgcgcttagcttgtttaagaaatggtgtaggttttgaatctaag
cctgaatatttagagttgcttaaagagttacctgaacaagagcaaagaacgtttgcctcg
aattggttgttagcggctgagcgacaaatggatgaagccgctatttacacaattcatgga
ttttgccaaaggatgcttgttcataatgcctttgagtcagggatattatttgagcaaacg
atgatccaagatgaatttccgattcagaaacaagcttgtgcggatttctggcgccgccat
ttttatccccttgattattcaatgactaaggtagttcagtctctgtggaatggtcctgaa
gcgcttttgtctgaaattaggccttttttacagggtgatattccagtcattatcaaccaa
ccaaagcagcaagaaactttagaagaacgtcatcatcggcttatttctttaattgaggca
gtaaaatcgtcttggttattaagtgtcgcggattttgaaaaaataattactgattctgat
gttgataaacgcagttatagcgctcgttttttacctaattggctagttaaaataactgaa
tgggctgaagaaagaacagaagattatcagttacctaaagatttaatgcgtttttctcaa
actgtattacatgaaaaatcaaaaacaggaagaggacctgagcatgctgtttttaggcaa
atagaagaattgcttgcacagtctttaacgatcaaagatttggttattcctttagcgatt
acgcaagtaaggcaaactattgctgatgaaaagtatagccgtggggaaatggggtttgat
gatttactgactcgtttagataatgcattaaaacaagaaggtggaaaatttcttgcggat
gcaatatgccaacgctttcccgttgcaatgattgatgagttccaagatacagatccacag
caatatcgtatttttcagcgtatttaccaaggcgttgataatagtgctctattatttatt
ggtgaccctaagcaggctatttatgcttttcgtggcgctgatattttcacatatatcgaa
gctaaaaaacaagttagtgctcactatacattagagactaactatcgctcttctaaaaat
atggttgaagccattaatcgtctatttagtcactgcgattccccttttatttttgaacaa
ataccatttcagccagttaattttgcaccaaataatatcgaaaaaaagttatatcatgat
ggcgttgaagttaatgcactgacgttttggcagttagatgcagaggcagtctctgttgcg
gagtatgaacaagcgattgctcgtcaatgtgccgcgaaaattgcacattatttacaaggt
ggattacaaggggatacctatttccttaataaaaatgaaaatattccagtagccgcctct
gacatcacggttttggttcgtagccgacgtgaggcggtattgattcgagatgcattaaat
caactcaatattccatcggtgtttcaatcaaatagggaaagtgtattttcaacccaagaa
gctagagatttattatggcttttgcaggcagtgcttacaccagaaaaagagcggatactc
cgcagcgctttagcgacggggattttagggctaaatgcgaaagatattgatgaatttaat
tataatgaaaaagcttgggaaaaattagttgatgaatttgctcgttatgctgctatttgg
cataaacagggtgttttacctatgctacgaattttgatggctgagcgacatattgcagaa
acattactctcaggattagagggtgagcggcgcttaatggatattatgcatatgggtgag
ctgttgcaggaaatgtcactacaacttgaaggtgagcacacactaacacgttggctagcc
cagcaaattgcccatcctgatcaccaatcagatgctcaacaaatgcgtcttgaaagtgat
agacacttagtgcaaatcagtactattcataaatcgaaagggcttgagtataaaattgtg
tggttaccttttgccagtaactttttaccacaatcaaaagggctttatcatgatagagat
gattatggttcaaggttagatttgaatgatgaagatgaatatgtagccttagccgatgaa
gaacggctggccgaggacttacgcttgctctatgtcgcattaacaagagcgatttatcat
tgcagtgttggtgttgccccgctgattaagggtaatcgtaaaaaaagtggtgagactgac
ttacatttatccgcacttggctacttacttcaacaagggcaagcaggtgataatgcatta
ctaaataaaatgttagctgaaattagtaatgaaaccatcaatgtaaatattattgatacc
cctgaatttgagcgtttatcgatagcgcaaaatgatcataatttacttacagcgaggggc
attactcggcattttgatgatcgctggcgggtaacgagctattccggtcttagttatagc
acaagctatattgatgatgggcaggcaatatctgcgatacaatttgctaattcattggct
ccaaaaatggatgttgaagtaagtaatgacgtcgagcagcaagaaacagatgaagtagcc
ttaacgcctcatcaatttcctaaaggcgcatcaccaggcacttttttgcatagtttgatg
gaagaaattaatttctctgaggaaccttctttagagtggctaattgagcaattagaatcg
tcaggttttgatagtcgttgggctttgatgttgcaagattggctcacatcgatagtgagt
gcaccgttatcggatgacgggctgtgtctatcggtattacaagcagaagatatgcttgat
gaaatgcaattttatctgccaattgaatcactattagatgcaaaggatgttgaccgaatc
actcatcaatatgaccctttatccatccagtgccctcctttaaactttgaaaaagtgcag
gggatcttaaaaggatttattgatttaactttcatttggaaaggaaagttttatctactt
gattataaatctaattatcttggtgaggatgcatcctgttatacgccgaaagcgatgtct
gaggcgatgatagaccaccgttacgatcttcaatatcaattatattcattagctttacat
cgttatcttaagcaaagaatacctaactaccattatgaaacgcattttgggggcgtctat
tatctttttctgcggggtatcgatagcgctgagtctaaaaatggtatctttttttatcgg
ccagccctaaattttattgaggaatttgatcaactgtttcgtgatgcccaatctaaggag
cagctatga
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