Providencia heimbachae: NCTC12003_03238
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Entry
NCTC12003_03238 CDS
T05509
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
phei
Providencia heimbachae
Pathway
phei02020
Two-component system
phei02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NCTC12003_03238
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC12003_03238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phei03021
]
NCTC12003_03238
Transcription machinery [BR:
phei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC12003_03238
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
SHNi-TPR
Tenui_NS3
Lipid_bd
Motif
Other DBs
NCBI-ProteinID:
SQH14651
LinkDB
All DBs
Position
1:3528076..3529521
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AA seq
481 aa
AA seq
DB search
MKQSLQLRVSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALETNPLLEQDEQDTELEPID
NFEQNTDSSEIDTKDALEKNDIPDELPLDADWDEIYSAGTPSGTSNDYSFEELPVYQGET
TQTLQDYLVWQAELTPFTDTDRAIAASIIDSIDDSGYLTSTIVDIHEGIDNPDITLEEVI
AVLKRIQHFDPLGVASQDLKECLLIQLSLYPKDTNGLAEAKLIISNHIDLLANRDFRQLS
KLTRLKEDALKTAIDLILTLNPKPGQSINTGESEYVIPDVLVKKISGHWQVELNTDSIPK
LSINNHYASLINNSANEGDSQYIRSHLQDAKWLIKSLESRHETLLKVATCIVEQQQEFFE
LGEEHMKPMILADIAYQVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVSTDSGGEAS
STAIRALVKKLVAAENPAKPLSDSKLTSMLAEQGIQVARRTVAKYRESLSIPPSNQRKQL
V
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaagtttgcagctcagagtcagccaacagctcgcaatgacaccccaattgcaa
caggccattcgtctgttacagttgtctacacttgagcttcaacaagagattcaactcgcc
cttgaaactaatccattgctggaacaagatgagcaggacacggaattagagcccatcgat
aatttcgagcaaaatacagatagtagtgaaattgataccaaagatgcgctagaaaaaaat
gacataccggatgaattgccccttgacgcagattgggatgaaatttactccgcaggtacg
ccatcagggacaagcaatgattatagctttgaagaacttcctgtttatcaaggggaaaca
acgcaaacattgcaagactaccttgtttggcaagctgaattaaccccttttactgatacc
gatcgcgctattgctgcctcaataattgattcaattgatgattcaggctatctcacatcc
acaattgtggatatccatgaagggattgataaccctgacattactctagaagaagtgatt
gccgttctaaaacggatccagcattttgatccactcggtgtcgcatctcaggatttaaaa
gagtgtttactcatccaactttctctttacccaaaagataccaatgggttagctgaagct
aagctgattattagcaatcatattgacttgctggctaatcgcgattttcgtcaactgagt
aaattaactcgtctaaaagaagatgcgctaaaaaccgccatagacctgatactcaccttg
aatcccaaaccagggcaatcgattaatacgggtgaatctgaatatgtgatacccgacgtt
ctggtgaaaaaaatcagcggacactggcaagttgagttaaatacagatagcatccctaaa
ctaagtattaataatcattatgcttcattaattaataattcagctaatgaaggtgactca
cagtatattcgtagtcatctgcaagatgcgaaatggctaataaaaagtctcgaaagccgc
catgagacactgttaaaagtcgcgacgtgcattgttgaacagcagcaagaattctttgag
ttaggtgaagaacacatgaaaccgatgatactggccgatattgcctatcaggtggatatg
catgaatcaactatctcaagagtgacaactcaaaagtttctccatagccctagaggtatt
tttgagttgaagtattttttctctagtcacgtcagtactgatagcggaggagaagcatcc
tcaacagctattcgtgctctagtgaaaaaactggttgctgctgaaaacccagcaaaacca
ttgagtgacagtaaattgacgagtatgctggccgaacaaggtattcaagttgctcgtcga
actgttgctaagtatcgtgaatcgttatctattccgccctctaatcagcgtaaacagctg
gtttaa
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integrated database retrieval system
