Providencia heimbachae: NCTC12003_03613
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Entry
NCTC12003_03613 CDS
T05509
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phei
Providencia heimbachae
Pathway
phei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12003_03613 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phei03019
]
NCTC12003_03613 (deaD)
03009 Ribosome biogenesis [BR:
phei03009
]
NCTC12003_03613 (deaD)
Enzymes [BR:
phei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12003_03613 (deaD)
Messenger RNA biogenesis [BR:
phei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12003_03613 (deaD)
Ribosome biogenesis [BR:
phei03009
]
Prokaryotic type
rRNA helicases
NCTC12003_03613 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
SQH15340
LinkDB
All DBs
Position
1:complement(3929775..3931760)
Genome browser
AA seq
661 aa
AA seq
DB search
MTTETDISFAELGLSASILTALNDLGYEKPSPIQKQCIPLLLDGNDVLGMAQTGSGKTAA
FGLPLLHNIDPELKAPQILVLAPTRELAVQVAEALSDFSKHMSRVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPA
QHQTALFSATMPEPIRRITRRFMKDPKEIRIQASITTRPDITQSYWTVNGMRKNEALVRF
LESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKMVIPEVDLPDANLLSQRRQEKFAAKVQQQLESSDLDQYRALLAKISPSEDGDIE
TLAAALLKMAQGERALILPPDAPRRPRREFNDRDDRRGDDRRRERTSGAASNGNSFDRAE
RGESGRRERRDVGDMEMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLYGTHTTI
ELPKGMPTEVLSHLSRARVLNKPMQMQLMGDAPPFERRGGGERRGGPRREGGSEGGFAGR
RNDRGGERDGRRGGASASEGSRRSSNSSAGGESRGRSTSAPRSQDGANTAAPRRRSSSHN
A
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgactactgaaaccgatatttcttttgctgagttaggcttatcagcatctattttgaca
gcactaaatgacctgggatatgaaaaaccatctcctatccagaaacaatgtattcctttg
ttgctggatggcaatgatgtattaggtatggcacaaacaggtagtggtaaaactgctgcg
tttggtttgccattactgcacaacatcgacccagaattaaaagcgccacaaattttagta
cttgcaccaactcgtgagttggcagtacaagtagcagaagcactgagcgatttttctaag
cacatgagccgtgttaacgttgttgccctatatggcggtcagcgttatgacgtacagcta
cgtgcattacgccaaggtccacaagttgttgtgggtacacctggtcgtcttcttgaccac
ttgaagcgtggtactttagacctttctaaactgaaaggcttagtattagacgaagcagat
gaaatgttgagaatgggctttattgaagatgttgaaaacatcatgagccaaattccagct
caacatcaaactgcgttgttctctgcaactatgccagagccaattcgtcgcattacacgc
cgttttatgaaagatcctaaagaaattcgcatccaagcgagcattactacacgtccagat
attactcaaagctattggactgtgaatggtatgcgtaagaatgaagcactggttcgtttc
ttagaatcagaagattttgatgcggcaatcatttttgttcggactaaaaatgcaacgttg
gaagtggctgaagcgcttgaacgtagcggttataacagtgcggcattaaatggtgatatg
aaccaagcattgcgtgagcaaacgctagagcgtttgaaaaacggtcgtttggatatcctg
attgcaactgacgttgcagctcgtggtcttgacgttgagcgtatcagcttagtcgttaac
tatgatatcccaatggatgcagaatcttatgttcaccgtattggccgtacgggtcgtgcg
ggtcgtgcgggtcgcgcattactgttcgttgagaaccgtgagcgtcgtcttctgcgcaac
gttgagcgtacgatgaagatggttatccctgaagttgatttaccagatgcaaatctgctg
agtcaacgtcgtcaggaaaaatttgcagcgaaagttcagcagcaattagaaagcagcgat
ttagatcagtatcgtgctctgttagcgaaaatctctccgtctgaagatggtgatatcgaa
acacttgcagcagcattgctgaaaatggcacaaggtgagcgtgcgctgatcctgccacct
gatgcacctcgtcgtccacgtcgtgaattcaatgaccgtgatgaccgtcgtggtgatgat
cgtcgtcgtgagcgtactagcggtgctgctagcaacggtaatagttttgaccgtgctgaa
cgtggtgagagcggtcgtcgtgagcgtcgtgatgtgggtgacatggaaatgtaccgcatt
gaagtgggtcgcgatgatggtgtggaagttcgtcacattgttggtgcgattgctaacgaa
gcagacatcagtagccgttacattggtaatatcaaattatatggtactcatacaacgatt
gagttaccaaaaggtatgccaactgaagtgttaagccacttaagccgtgctcgcgtgttg
aataaaccaatgcaaatgcagctgatgggtgatgctcctccatttgagcgccgtggtggc
ggtgagcgtcgtggtggtccacgtcgtgaaggtggaagcgaaggtggttttgcgggtcgt
cgtaatgatcgtggcggcgagcgtgatggtcgtcgtggtggtgctagtgctagcgaaggc
agccgccgtagcagcaatagtagtgctggcggtgaaagccgtggtcgtagtacctctgca
ccacgtagccaagatggtgctaacacagcggctccacgtcgtcgtagcagcagccataac
gcataa
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