Prevotella herbatica: prwr041_02070
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Entry
prwr041_02070 CDS
T08008
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pher
Prevotella herbatica
Pathway
pher03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pher00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
prwr041_02070 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pher03021
]
prwr041_02070 (rho)
03019 Messenger RNA biogenesis [BR:
pher03019
]
prwr041_02070 (rho)
Transcription machinery [BR:
pher03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
prwr041_02070 (rho)
Messenger RNA biogenesis [BR:
pher03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
prwr041_02070 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA
AAA_25
LBR_tudor
LAGLIDADG_4
Mor
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BCS84314
UniProt:
A0ABN6EEF3
LinkDB
All DBs
Position
258176..260158
Genome browser
AA seq
660 aa
AA seq
DB search
MYSKDELLSKDASELEDIATNLGADYKTDFSQEDMIYAILDKQAEEEGNKNPLVAKRKRT
RIAKKDTDRIYTVKGKDGENLDLKKKNMTTTDSKPLFKDIEDEPSPEEILAKMPKHRGRK
SKKELELIAAAEAAKQNTNDNSTNADEYNDNSEPNKNIETEKQEDLFSNNNENDFIPEAA
FSSVEDNNDDNEKNELLNQLKAKINDHNKDVEDDNIETTSPDGYWNGDPADGTDFITVVD
LPIEDQGVVPNYDMFDNPTTTVAPAPAPTPVQQIFQRPEPTNVEKFDFLDLITANGVLEV
MPDGYGFLRSSDYNYLSSPDDVYVSTNIIKKYGLKTGDVIQCHVRPPHDGEKYFPLTNID
QINGRNPNEVRDRIPFEHLTPLFPDEKFTLCGDRATTNLSTRVVDLFSPIGKGQRALIVA
QPKTGKTILMKDIANAIAANHPEAYLMMLLIDERPEEVTDMARTVNAEVIASTFDEPAER
HVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLTGGVDANALQKPK
RFFGAARNIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRSLSNKRIFPAV
NLVASSTRRDDLLQEKTTLDRMWILRKYISDMNPIEAMNSIHDKMVHTRNNDEFLLSMNS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcaaggatgaattattatctaaagatgcctctgaattggaggacatcgctacg
aatttaggtgctgactataaaactgacttcagtcaggaagacatgatttatgctattctt
gataaacaggcagaagaagaaggtaacaagaatcctcttgtagcaaaaagaaaacgcacc
agaattgccaagaaagacacggaccgtatatacacagttaaaggcaaagatggtgaaaac
ttagatttaaagaaaaaaaacatgacaaccacagactcaaaaccattatttaaagatatt
gaagatgaaccttctcctgaagaaattcttgctaagatgcctaagcatcgtggacgcaag
tctaaaaaggaattggaactcattgctgcagctgaagctgcaaaacaaaatacaaatgat
aattcaactaatgccgatgaatacaacgacaatagtgaacccaataaaaatatagagacc
gaaaaacaagaagatctcttctcaaataataatgagaatgattttattcctgaagcagcg
ttttcttctgtcgaagacaataacgacgacaatgagaaaaatgagcttttaaatcagcta
aaggcaaaaattaatgaccacaataaagatgttgaagatgataatatcgaaacaacaagt
cctgatggttattggaacggagatccagctgacggaactgatttcataacagtcgttgac
ttacctatagaggatcagggggttgtgccaaactatgatatgtttgataatcctacaaca
acagttgcaccagcaccagcaccaacaccagtacaacagattttccaaagacctgagcca
actaatgtagaaaaatttgattttctagatctaatcactgcaaatggtgtacttgaagta
atgcctgacggttacggcttcttgcgttcaagtgattataattatctatcatcacctgat
gatgtatatgtatctacgaatattataaaaaaatatggtcttaaaacaggtgacgttata
caatgccacgtaagaccacctcacgatggcgagaaatatttccctcttacaaacattgac
caaataaatggaagaaatccaaatgaggtaagagacagaattccatttgaacacctcacc
ccactcttccctgacgagaaattcactctttgtggagacagagcaacaacaaacctttct
acaagagtcgtagacttattctcacctatcggaaaaggacagcgtgcactcatagttgca
cagcctaagacaggtaagactatactcatgaaagacattgcgaatgctattgccgcaaat
catcctgaagcatatcttatgatgcttcttattgacgaacgtcctgaggaagttaccgac
atggcacgcactgtaaacgcagaagttatagcatctactttcgatgaacctgctgaaaga
catgtaaaaatagcaggaatagtgcttgaaaaagctaagagaatggtagaatgtggacat
gatgttgttatattccttgattctattacgcgtcttgcacgtgcatacaatacagtaagc
cctgcaagtggaaaggtattgactggtggtgttgatgctaacgcattgcaaaaaccaaag
agattcttcggtgctgcaagaaatatagaaggtggcggttcgcttaccataatagcaaca
gcccttatagataccggtagcaaaatggacgaggttatattcgaggaattcaagggtaca
ggtaatatggaattgcaacttgaccgctcattaagtaataagagaatattcccagctgtc
aaccttgttgcatcaagcactagacgtgatgacttattgcaggaaaagactactcttgat
agaatgtggatattacgtaagtatattagcgacatgaaccctatagaagcaatgaattct
attcatgacaagatggttcatacaagaaataatgacgaatttcttctttctatgaactca
tag
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