Prevotella herbatica: prwr041_08500
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Entry
prwr041_08500 CDS
T08008
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pher
Prevotella herbatica
Pathway
pher03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pher00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
prwr041_08500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pher03021
]
prwr041_08500 (rpoC)
03400 DNA repair and recombination proteins [BR:
pher03400
]
prwr041_08500 (rpoC)
Enzymes [BR:
pher01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
prwr041_08500 (rpoC)
Transcription machinery [BR:
pher03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
prwr041_08500 (rpoC)
DNA repair and recombination proteins [BR:
pher03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
prwr041_08500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BCS84957
LinkDB
All DBs
Position
complement(1155357..1159679)
Genome browser
AA seq
1440 aa
AA seq
DB search
MAFKKDTKVKNNFTKITIGLASPEEILENSYGEVTKPETINYRTYKPERDGLFCERIFGP
TRDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERSGHIELVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDAVVYYEKYIVIKAGAMEGRKDADGLELNGSHKMDLLSEDEYLDILDNK
IDPNNDYLDDSDPNKFIAKMGAEAIYDLLVNIDLDGLSYELRDRANNDGSQQRKTEALKR
LQVVEAFRASRDFNKPEWMIMKIIPVTPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNR
LKRLMEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSESNRPLKSLSDSLKGKQGRF
RQNLLGKRVDYSARSVIVVGPELKMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKSAK
KIVDRREPVIWDILENVMKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFN
ADFDGDQMAVHLPLSNEAVLEAQILMLQSHNILNPANGAPITVPSQDMVLGLYYITKIRP
GAKGEGLNFYGSEEAMIANNEGRCELHARVKCIVDDVVDGKPVRHMVETSVGRVIVNQII
PDEVGFFNDIISKKTLRGIISDVIKAVGMARACSFLDGIKNLGYRMSYVAGLSFNLDDII
IPEEKADIVGKGQEEVDQIKANYEMGFITDTERYNQVIDAWTHVNNDLGNVLMKEMTEAD
QGFNAVYMMLDSGARGSKDQIKQLSGMRGLMAKPQKAGAEGQQIIENPILSNFKEGMSVL
EYFISSHGARKGLADTAMKTADAGYLTRRLVDVSHDVIITEEDCGTLRGLECRALKNGDE
IISTLYERILGRVSVHDIVLPTTGEIIVHAGEEINEAKAKIIDESPIEMVEIRSVLTCES
KHGVCMKCYGRNLATARMVQLGEAVGVIAAQAIGEPGTQLTLRTFHAGGVAGNAAANASI
VAKNDCKVEFDEIRTVPFKNEDDKDCKMVVSRLAEIRFIDPNTNIVLSTLNVPYGSSLYF
GQGDLVKKGDLIAKWDPFNAVIVTEYAGTLRFNDVIEGITFHAETDDTTGLTEKIITDSK
DRSKVPTCDILDAAGNVVGTYNFPVGGHVVIEDGATVNTGETIVKIPRAVGGAGDITGGL
PRVTELFEARNPSNPAVVSEIDGEVTMGKVKRGNREIIVTSKTGDQKKYLVSLSKQILVQ
EHDAVRAGTPLSDGVTTPGDILAIKGPTSVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQ
MMRKVRIDDPGDTTFLEQELVDKLDFAEENDRIWGKKVITDAGDSDIMKPGQIVTARKLR
DENSSLKRRDLKLVQVRDAVPATSTQILQGITRAALATKSFMSAASFQETTKVLNEAAIR
GKQDKLEGMKENVICGHLIPAGTGLRQWDKLVVGSKEEYERMQANRKNVLDFAEHGVVTE
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaagaaagatacaaaagttaaaaataattttacgaagattactataggtctt
gcctctcctgaggagatcttggaaaattcgtatggcgaggttacaaaacctgaaaccatt
aattatcgcacatataagcctgaacgtgacggtctattctgtgagcgtatttttggtcct
acccgtgattatgaatgtgcctgcggtaagtacaagcgtattcgttataaaggtatcgta
tgtgatcgatgtggtgtagaggtaactgagaaaaaggttcgtcgtgaacgttcgggacat
attgaactcgttgtcccagttgctcatatctggtatttccgttctttacctaacaaaata
ggttatctgttgggacttccaacaaagaaacttgatgctgtggtatactacgaaaagtat
atcgttatcaaggctggtgccatggagggaaggaaggatgctgatggtttggaacttaac
ggttctcacaagatggacctcctttctgaggatgaatatcttgatatccttgacaataaa
atagatcctaacaatgactatcttgatgatagcgaccctaataagtttatcgctaaaatg
ggtgctgaagcaatttatgatttgctagttaatatagatcttgacggtttgagctatgaa
ttacgtgaccgtgctaacaatgatggtagccagcagcgtaagacagaggctttgaagcgt
ctacaggttgttgaggcattccgtgcatcaagggatttcaataaaccagagtggatgata
atgaagattatcccagtaactcctcctgagttgcgtccacttgtaccacttgatggtggt
agatttgctacatctgaccttaacgacttatatcgtcgtgtcattatacgtaacaatcgt
cttaagagacttatggaaattaaggctcctgaggttatcttgcgtaatgagaaacgtatg
cttcaggaagctgtcgattctttgtttgacaattcacgtaagtcttcagctgttaagagt
gaaagcaatcgtcctttgaagtcactttctgattcactgaaaggtaaacagggacgtttc
cgtcagaacttacttggtaagcgtgttgactattctgcacgttctgtaatcgttgtaggt
cctgaattgaaaatgggcgagtgcggtcttccaaaattaatggcagccgaactatataag
ccatttattatacgtaagcttattgagcgtggtatagtaaagactgtaaagagtgcaaag
aagattgttgatcgtcgtgaaccagttatttgggatatccttgaaaatgtaatgaaggga
caccctgtaatgcttaaccgtgcgccgacacttcaccgtcttggtattcaggctttccag
ccaaaacttattgaaggtaaagctatccagcttcatccacttgcatgtactgctttcaac
gctgactttgatggtgaccagatggctgtccatcttccattaagtaatgaggctgtactg
gaggcacagattcttatgctgcaaagccataatattctgaacccagcaaatggtgcccct
atcacagtaccttcacaggatatggtgcttggtttgtattacattacaaagatacgtcca
ggtgctaagggagagggacttaatttctacggatcagaagaggctatgattgccaataac
gagggacgttgtgaactgcatgcacgtgttaagtgtatagttgatgatgtcgttgatggc
aaaccagttcgtcatatggttgaaacatctgttggacgtgttatcgtaaatcagattatt
cctgatgaagtaggtttctttaatgatattatttcaaagaaaacacttcgtggcatcatt
tctgatgttatcaaggctgttggtatggctcgtgcttgttctttccttgatggaatcaag
aacttgggttaccgtatgtcttatgttgctggtctttcatttaacttggatgatattatc
ataccagaggagaaggctgacattgtaggtaagggtcaggaagaggtcgatcagataaag
gcaaactatgaaatgggtttcatcactgatactgagcgttataatcaggtaattgatgca
tggactcacgtaaataatgaccttggtaatgtcttgatgaaagagatgactgaggctgat
cagggattcaatgctgtatacatgatgcttgattctggagcccgtggttctaaagaccag
attaagcagctttcaggtatgcgtggtcttatggcaaagcctcaaaaggctggtgctgaa
ggacagcagattattgaaaacccaattctttctaacttcaaggaaggtatgtctgtgttg
gagtacttcatctcttcacatggtgctcgtaagggtcttgctgataccgctatgaagact
gccgatgctggatatctgactcgtcgtcttgttgacgtctctcatgatgttattatcaca
gaggaagattgtggtacacttcgtggtcttgaatgtcgtgccctaaagaatggtgacgaa
ataatttctacattgtatgaacgtattcttggacgtgtttctgttcatgatattgttctt
cctacaactggtgagattatagttcatgctggtgaggaaatcaatgaggctaaagctaaa
ataattgacgagtctccaattgaaatggttgaaatccgttcagttcttacttgtgaaagc
aagcatggtgtatgtatgaagtgttacggacgtaaccttgctactgcaagaatggttcag
ttaggtgaggctgtcggcgttatcgctgctcaggctatcggtgaacctggtacacagctt
acacttcgtactttccacgctggtggtgttgctggtaacgcagcagcaaatgcaagtatt
gtggcaaagaatgattgtaaagtagaatttgatgaaattcgtactgttccattcaagaac
gaggacgataaggattgcaaaatggttgtaagccgtcttgctgaaattcgtttcatcgat
ccaaatacaaatatagtacttagtactcttaatgttccttacggttcttcactttatttc
ggtcagggtgacttggtaaagaagggtgatctaattgcaaaatgggatccatttaatgcc
gtcatcgttactgagtatgcaggtacgttgagattcaatgacgtcatcgaaggtataacc
ttccatgctgaaaccgacgatacaaccggtttgacagaaaagattattacagattctaag
gaccgttcaaaggttcctacatgtgatattcttgatgctgctggtaatgttgttggaaca
tataacttccctgttggtggtcacgttgttattgaagatggtgcaacagttaatactggt
gagactatcgttaagattccacgtgcagtaggtggtgctggtgatatcactggtggtctg
cctcgtgtaacagagttgttcgaggctcgtaatccttctaacccagctgtcgtttctgaa
attgatggtgaagtaacaatgggtaaggttaagagaggtaaccgcgagattatcgtaact
tcaaagactggtgatcaaaagaaatatctagtatcattgtctaagcagattcttgttcag
gaacatgatgctgttcgtgctggcacacctctttctgatggtgttaccactcctggtgat
atccttgcaattaagggtcctacttcagtgcaggaatatatcgtgaatgaggttcaggac
gtttatcgtctacaaggtgttaagattaatgataagcactttgaaattatcgttcgccag
atgatgcgtaaggttcgtatagatgatccaggtgacacaacattcttggagcaggaattg
gttgataaattggatttcgcagaagagaatgatcgtatttggggtaagaaagttatcaca
gatgctggtgattctgatattatgaaaccaggtcagattgttactgcacgtaagttgcgt
gacgagaactcttctctgaaacgccgcgatctcaaactcgttcaggtgcgtgatgctgtt
cctgcaacatctactcagattctgcagggtattactcgtgccgctcttgctactaagagc
tttatgagtgctgcttctttccaggaaacaactaaggttcttaatgaggctgcaattcgt
ggtaagcaggataagcttgaaggtatgaaagaaaatgttatttgtggacatttaatacca
gcaggtactggacttcgccaatgggataaacttgttgtcggttcaaaagaagagtatgag
cgtatgcaagctaatcgtaaaaatgttcttgacttcgctgaacacggagttgttacagaa
taa
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