Prevotella herbatica: prwr041_15330
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Entry
prwr041_15330 CDS
T08008
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pher
Prevotella herbatica
Pathway
pher03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pher00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
prwr041_15330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pher03019
]
prwr041_15330
03400 DNA repair and recombination proteins [BR:
pher03400
]
prwr041_15330
Enzymes [BR:
pher01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
prwr041_15330
Messenger RNA biogenesis [BR:
pher03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
prwr041_15330
DNA repair and recombination proteins [BR:
pher03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
prwr041_15330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
BCS85640
LinkDB
All DBs
Position
2134290..2136467
Genome browser
AA seq
725 aa
AA seq
DB search
MTKEVNLTQQLKHYFGFDKFKGDQEAIINNLLDGNDTFVLMPTGGGKSLCYQLPSLIMEG
TAIVISPLIALMKNQVDVINGMSEESGVAHYLNSSLNKASIQQVMDDVKSGVTKLLYVAP
ESLNKEENVEFLKSVKISFYAIDEAHCISEWGHDFRPEYRNIRPTIGKIGNAPVIALTAT
ATDKVRTDIKKNLGISDAKEFKSSFNRANLYYEVRPKTQDIDKQIIKFIKQHEGKSGIIY
CLSRKKVEELSEVLKTNEIKASPYHAGLDSSTRSQTQDDFLMERIDVIVATIAFGMGIDK
PDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICIAFYAQKDLKKLEKFMEGKPVAEQDI
GRQLLQETAAYAESSVCRRKMLLHYFGEEYNKENCHNCDNCLHPKDKIEASKDLLVVLKS
ILAIKENFRQEYIIDFVKGRGTDDIVSHHHDQLEEFGSGEDENPKLWNPVIRQALIAGYL
KKDVENYGLLKVTAAGRRFIKNPEKFFIVMDNEFKDDYEEESGESVAAALDPELFIMLKN
LRKSMAQKLNIPGYVIFQDQSLEQMATMYPITNEELQQIQGVGAGKAKRYGKEFLQLIKR
HCDDNGIERAEELRVRTVAKKSVTKVKIIQSIDRQVALDDLADALGMELPELLDEIEAIV
YSGTKINIDYFIEDVIDDDHIDDIYDYFNESETDNLEDAIEELGEDYSEDEIRLVRIKFL
SEMAN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaggaagttaatcttacacagcaactcaaacattatttcggctttgacaagttc
aaaggcgaccaggaagctattatcaataatctgttggatggtaatgacacgtttgtgctt
atgcctactggcggaggtaaaagtttatgttatcaattaccttctttgataatggaaggt
acggctatcgttatttctcctcttatagcgttgatgaaaaatcaagttgatgttatcaat
ggtatgagtgaggaatcaggagtcgcacattatttgaactcatcactaaataaagcatct
atacaacaggttatggatgatgtaaaaagtggtgttacgaagttgctttatgtagccccg
gaatctcttaacaaggaagaaaatgttgagtttcttaaatcagtgaagatatcattttat
gctattgatgaggcgcattgtatttctgagtggggacacgatttccgcccagagtacaga
aatatcagaccgacaataggtaagataggtaatgctcccgtaatagcgcttactgcaact
gcaacagacaaagtacgtaccgatataaagaaaaaccttggcatctctgatgcaaaggaa
ttcaaaagttcttttaatagagctaatctatattatgaggtgcgtcctaaaacacaggat
attgataaacaaattatcaaatttatcaaacagcatgaaggtaagagtggtatcatatat
tgtctttctcgaaaaaaggttgaagaactttctgaagtgctcaagacaaatgaaataaag
gcatctccatatcatgcaggacttgacagttcaacacgctcacaaactcaggatgatttc
ctgatggaacgtattgatgtaattgtcgctacaatagcttttggtatgggcatagataag
ccagatgtgcgcttcgtaatacattatgatataccaaaaagtcttgagggatattatcag
gaaacaggtcgtgcaggccgtgatggaggggaaggtatatgtatagctttctatgcacag
aaagaccttaaaaaattagagaaattcatggagggtaaacctgttgccgaacaggatata
ggtagacaattacttcaggaaacagctgcttatgcggaatcttctgtttgccgtcgcaaa
atgttacttcattattttggcgaggagtataataaggaaaattgccacaattgcgataat
tgtcttcacccgaaagataaaatagaagccagtaaggatttgttagtggtgttgaagtca
atcctagcaataaaagaaaacttccgtcaggaatatattatagattttgtcaaaggacgc
ggaacagatgatatcgtgtctcatcatcatgatcaattagaagagttcggctcaggtgaa
gacgaaaatccaaaattatggaatcctgtcatccgtcaggcacttatagcaggctatctt
aaaaaagatgttgaaaactacggattattaaaggttactgcagccggtagacgctttata
aaaaatcctgagaaattctttattgtaatggataatgaatttaaggatgattatgaggaa
gaaagcggagaatctgtagcagcggcacttgatccggaactgtttataatgttaaagaac
cttcgtaagagtatggctcagaaacttaatattccagggtatgttatttttcaggaccag
tctttggagcaaatggctacaatgtaccctattacgaatgaagaactgcaacagattcaa
ggagtcggagctggtaaggcaaaacgatatggtaaagaattccttcaattgattaagcgt
cattgtgacgataacggtattgagcgtgcagaggaacttcgtgtgcgtactgttgcgaag
aaaagtgtaacgaaagtaaagataatacagagcatagaccgccaggttgcactagatgat
cttgctgatgccttaggtatggagcttccagaactcctagatgaaattgaggcaatagta
tatagtggaactaaaataaatattgattatttcattgaagatgttatagacgatgatcat
atagacgatatctatgattatttcaatgagagtgaaaccgataatctagaggatgcgata
gaagagttgggcgaagattattcagaagatgaaattcgtcttgtaaggattaaattttta
tctgaaatggcaaactaa
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