Porcisia hertigi: 94286299
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Entry
94286299 CDS
T10408
Symbol
JKF63_00170
Name
(RefSeq) hypothetical protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
phet Porcisia hertigi
Pathway
phet03008
Ribosome biogenesis in eukaryotes
phet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phet00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
94286299 (JKF63_00170)
09123 Folding, sorting and degradation
03018 RNA degradation
94286299 (JKF63_00170)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phet03021
]
94286299 (JKF63_00170)
03019 Messenger RNA biogenesis [BR:
phet03019
]
94286299 (JKF63_00170)
03009 Ribosome biogenesis [BR:
phet03009
]
94286299 (JKF63_00170)
03016 Transfer RNA biogenesis [BR:
phet03016
]
94286299 (JKF63_00170)
Transcription machinery [BR:
phet03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
94286299 (JKF63_00170)
Messenger RNA biogenesis [BR:
phet03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
94286299 (JKF63_00170)
Ribosome biogenesis [BR:
phet03009
]
Eukaryotic type
Pre-60S particles
RNases
94286299 (JKF63_00170)
Transfer RNA biogenesis [BR:
phet03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
94286299 (JKF63_00170)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
94286299
NCBI-ProteinID:
XP_067752379
UniProt:
A0A836HB59
LinkDB
All DBs
Position
36:complement(<738362..>740887)
Genome browser
AA seq
841 aa
AA seq
DB search
MGIAGFFLWLQRWYGDCIDNVPQDVVDAAFNGHALPISHASAYSYDNFYVDMNGLIHPCC
HDTAPLPEPENEEEMFERMFDQLDLLVRVVRPKKCLVLCIDGVAPRSKMNQQRSRRFRAA
DERLESDAISNACADRIVSEYHLPRPRVRERWDHNVITPSTAFMERVALALEWYIMKKLN
EDQAWRHLTVVFSDAHVPGEGEHKIMQYIRGLRSQPGYDHNTTHVIHGMDADLICLGLST
HERHVSILRNQLTETFQPDHRRFCYFNLHTYRQRLMKDFANIEGMQFERVVDDFIFLCFF
VGNDFLPHVPLVSIKTRGIEMLLDHYVRDFALHGYLTQLGEVDYAHLHIFLSNFASKCMV
KLTKEYYGVIRGKERAKQHVEERVTKTEAQVSEVLGSLLADGSNAQEVSDTLLGLMSSVR
KERSRLVVDKQPLGFSYLDKAYRDAYYQHKFGWDPSTKRAAFEGQIRLCCAEYLRGLQWV
MRYYTKGCPSWEWYFPYHYAPLLQDLAAFTATVNVEMRMSAPLHPVEQLLAVLPRLSVHA
LPEELHEAVNDPKSVLGKFYPAMVDVDMSEANFSYQGVLRIPFINCEALSTACRELVELE
EDFGSTFLYCHESTLLATQLDALTNPANSALPLATGLAPPVVPIPATVASAMPIAGRVGR
YEAEWPRHEELQCPDPGMAKATRYGGRIENNRVNQYRYELSTQSDYRPVLLGERRPTKES
EAAVPKTSKQLSGEGSPQQHRRQHRDADHIASNGDTKNQRKSSRADDHDDRRKRHRSDGE
GEKKHLRCDTHFHGSTSEARSEPSSFSLRANGILEAKREPQSFAKAASTNSAQRANHKRH
T
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgggcattgcgggcttctttttatggttgcagcgatggtacggcgactgcatcgacaac
gttccacaggatgttgttgatgccgccttcaatggccatgcgcttccgatcagtcatgcc
agcgcgtactcgtacgacaatttctatgtggatatgaacgggctaattcacccgtgttgt
cacgacacggctccactaccggagccagagaacgaggaggagatgtttgagcgcatgttt
gaccagcttgacctccttgtcagggtggtgcgtccaaaaaagtgtctcgttttgtgtata
gacggtgttgctccgcgtagtaaaatgaatcaacagcgtagccgtcgctttcgcgccgca
gacgagcgtctggagagcgacgccatctcgaacgcatgcgcagaccgcatcgtctcggag
taccaccttccccggccacgcgtccgggaaaggtgggaccacaatgtcataacaccatcg
acagcgtttatggagcgtgtcgccctcgcgctcgagtggtacatcatgaagaagctgaac
gaggaccaagcgtggcgccacttgaccgtggtcttctctgacgcgcacgtgccgggcgag
ggcgagcacaagatcatgcagtacatccggggactgcgctctcagcctggttacgatcac
aacactacccacgtaattcacggcatggatgccgatctcatatgcctcggtttgtcgacg
cacgagaggcatgtgtcgatcttgcgtaatcagctcaccgagaccttccagccagaccac
cgccgcttctgctactttaacctacacacctaccgccagaggcttatgaaggatttcgca
aacattgagggcatgcagttcgagcgggtcgtcgatgactttattttcctgtgcttcttc
gttggcaacgatttcttgccgcatgtgccgctcgtgtctatcaagacgcgtggcattgag
atgctcctggaccactacgtgcgggacttcgcgttgcacggttacttgactcagttgggc
gaggtggactacgctcacctgcacatcttcctcagcaacttcgcttccaagtgcatggta
aagcttacaaaggagtactacggcgtcattcgtggcaaggagcgcgcaaagcagcacgtt
gaggagcgcgttacgaagacagaggcgcaagtgtcggaggtgctggggtcactcctggca
gatggcagcaacgcgcaggaggtgagtgacactttgctagggctcatgtcctctgttcga
aaagagcgcagtcgtctcgtggtggacaagcagccgcttgggttctcttacctcgataaa
gcgtatcgcgacgcttactaccagcacaagttcgggtgggacccctcgactaagcgtgcg
gcgttcgagggccaaatccgactctgctgcgccgagtacctgcgtggactgcagtgggtg
atgcgctactatacgaaggggtgcccgtcatgggagtggtactttccataccactatgcc
cctctcttacaggatttggcggccttcaccgcgacggtgaacgtggaaatgcgcatgagc
gcacctcttcacccagtggagcagctactggcggtgctgccgcggttaagcgtgcacgcg
ttgcccgaagagctacacgaggctgttaacgaccccaagtctgtcttgggcaagttttac
cccgctatggtggacgttgacatgagcgaggctaacttttcgtatcaaggtgtgttgcgt
attcctttcatcaactgcgaggcactcagtacggcgtgccgagagctggtcgagctggag
gaggatttcgggagcaccttcctctactgtcatgagtctaccttacttgcgacgcagttg
gatgcactgaccaacccggcaaatagcgcattgccgctggcaactggtctggcgccgcct
gtcgtgccgattccggccaccgttgcatcggcgatgccgatcgccggtcgtgtggggcgc
tacgaagcggagtggccgcgacacgaagagctgcagtgccctgatcccggcatggccaag
gcaacgcgctacggtggacgtattgagaacaaccgggtcaaccagtaccgctacgagctt
agcacacagtccgattaccgcccggtgctcctgggtgagaggaggccgaccaaagaatca
gaggccgcggtgccaaagacatcgaagcagctgtcaggagaggggtcaccacaacagcac
cgcaggcagcatcgcgatgctgaccacatcgctagcaacggcgacaccaaaaaccagagg
aaatcgagcagagccgacgaccatgacgacaggcgcaagcgacaccgcagcgacggcgag
ggagagaagaagcacttgcgctgtgatactcatttccatgggagtaccagtgaggcgcgc
tccgaaccctcatcgttctctctacgcgcgaatgggattctcgaagcgaaaagggagccg
cagtcgttcgcaaaggcggcttcgactaactcagcgcagagagccaatcacaagcggcac
acatga
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