Porcisia hertigi: 94286431
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Entry
94286431 CDS
T10408
Symbol
JKF63_00302
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
phet Porcisia hertigi
Pathway
phet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
94286431 (JKF63_00302)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phet03019
]
94286431 (JKF63_00302)
03041 Spliceosome [BR:
phet03041
]
94286431 (JKF63_00302)
03009 Ribosome biogenesis [BR:
phet03009
]
94286431 (JKF63_00302)
03016 Transfer RNA biogenesis [BR:
phet03016
]
94286431 (JKF63_00302)
Enzymes [BR:
phet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
94286431 (JKF63_00302)
Messenger RNA biogenesis [BR:
phet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
94286431 (JKF63_00302)
Spliceosome [BR:
phet03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
94286431 (JKF63_00302)
Complex C
U4/U6.U5 tri-SnRNP related factors
94286431 (JKF63_00302)
Ribosome biogenesis [BR:
phet03009
]
Eukaryotic type
Pre-60S particles
Helicases
94286431 (JKF63_00302)
Transfer RNA biogenesis [BR:
phet03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
94286431 (JKF63_00302)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
ATPase_2
FlxA
PhoH
AAA_22
AAA_16
DnaB_C
Motif
Other DBs
NCBI-GeneID:
94286431
NCBI-ProteinID:
XP_067752511
UniProt:
A0A836I9B5
LinkDB
All DBs
Position
36:complement(1274169..1277036)
Genome browser
AA seq
955 aa
AA seq
DB search
MSDTRENEPAEKRARREVDPAITFPYELDTFQKASIDALENSDSVLVSAHTSAGKTTVAL
YAIAKALREKKRVIYTSPIKALSNQKFREFSEKFDSVGLMTGDTTIKPDSDCLVMTTEIL
RSMLYRGTEMLREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREF
ADWVESIHPTTKVHVIHTDYRPVPLQHYLYPAGADGIFLIVDEKGKFRDDNFSKAMTSMG
AEGGANGASATGPGNGATGGPRGNKGGSAGGRSRGGSSQSMMEIVKLVMDRNMYPVIVFS
FAKAECERNALALSRLNFNNTEEDALVMEVFSNAMESLAEEDRKLPAIEHLLPLLKRGVG
IHHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTAVKKFDGEKNRYLT
GGEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDMLKQLTGGGADVLLSSFHLTYNMVLNL
LRVEDVDPEFMMKRSFSQFQRLRNKPALEEKEAVLRKSIDEINVPHENAFRQYTICEGMI
AKKKSEVDQILRQPKFLKNWVQGGRFVHIVRASDQLDFGWGICRSFSAKSTNPDFSDASA
FSIQAAVICMKASVSNPSALTPCPVSEYTSEKADLYTVTFDFSDVQSLSTLKTNLPENPD
SERGRAEVVQILSKLLRQFGSKVPVLTAAHMGAEDAQLSKLQTQVSNLQKQLEGNMLTTS
PTPELQEEFDQFKRKADLEAQLELVKGELAGMGKAVFSEELRQMMRVLRRLDYIDKDNII
LRKARVACEITTTDENEILLTELLFKGVLNSMETEMIVALLSCLVNVHRTPDGFLLPQEF
EQPLKDLNEIVTRIATVSAESGLMQENSSVEKVMPSLMEVTYLWAKGAKFVDLVSKTTAY
EGEIVRMMRRLEEMLRQLASAARSPAIGSIELHDKFLKGIQLIKRDIVFASSLYL
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatacccgtgagaacgagccggccgaaaagcgcgcacgccgggaggtcgaccca
gccattaccttcccctatgagctcgatacgtttcagaaagcgagtattgacgctctcgag
aacagcgacagcgtcctcgtttcggcgcacacgtcggcaggtaagaccaccgtggcgctc
tacgccatcgccaaggcacttcgagagaagaaacgtgtcatctacacctcccccatcaag
gcactcagcaaccaaaagtttcgagaattctccgagaaattcgactccgtcggtctcatg
accggcgacaccaccattaagccagactctgactgtctcgtcatgacaacggagatcctt
cgtagcatgttgtaccgcggaacggaaatgctgcgcgaagtcggttgcgttgtcttcgat
gaggtgcactacatgcgcgacaagtctcgtggcgtggtgtgggaagagacgatcagcctg
ctcccagaaggatgccagtacgtgttcctctccgccaccatcccaaacgcgcgcgagttt
gcggactgggtggagagcatccatcctaccacaaaagttcacgtcattcacacagattac
aggccagtgcctctgcagcactacctgtacccggctggggccgacggcatctttctcatt
gtagatgaaaagggcaaatttcgcgatgacaacttcagcaaggcaatgacgtcaatgggg
gcggagggcggtgccaacggtgcgagtgcaaccggcccgggcaatggcgccacgggaggc
ccgcgcgggaacaagggcggcagcgccggcggtcgaagccgtggcggctcctcgcaatct
atgatggagattgtgaagcttgtgatggaccgcaacatgtaccctgtgatcgtcttttcc
ttcgccaaggcggagtgtgagcgcaacgccctcgccctctcgcggctgaactttaataac
acagaagaggatgcgctcgtgatggaggtgttcagcaacgctatggagtcgctggcggaa
gaggaccggaaactgcccgcgattgagcatcttctcccactcctgaagcgtggtgtcggc
attcatcactccggacttcttccaattctgaaggaggttgtcgagattctcttccaggcg
ggtctggtcaaggttctgttttctacggagaccttttccatgggtctgaacatgccggcc
cgtacggtggtcttcaccgctgtcaagaagttcgatggcgagaaaaaccgctacctcact
ggcggcgagtatattcagatgtcagggcgcgccggtcgtcgtggtctcgaccgcgtcggc
gttgtcatcgctatggtggatgaagcagtggagcccgacatgctgaagcagctgaccggc
ggtggtgctgacgtgctgctcagcagcttccacctgacgtacaatatggttctgaacctg
ttgcgtgttgaggacgtcgatcctgagttcatgatgaagcgcagcttctcgcagttccag
cgactgcgtaacaagccagcgttggaagagaaggaagccgttctgcgcaagtccatcgac
gagatcaacgtgcctcacgagaacgccttccggcaatacacgatttgcgaaggcatgatc
gcaaagaagaaatcggaggttgaccagattctgcgacagcccaagttcctgaagaactgg
gtccagggagggcgctttgtgcatatcgtccgcgcttccgaccagctcgactttgggtgg
ggcatctgccgctcattctccgcgaagagcactaaccccgacttcagcgacgccagcgct
ttctcaatccaagccgcagtgatctgcatgaaggcgagcgtctcgaatcctagcgccttg
acaccatgcccagtcagcgagtacacctcagagaaagcggacctgtacacggttacgttc
gacttctcagacgtgcagagtctttcaacgctcaagacgaatctccctgaaaaccccgac
tcggagcgtgggcgtgcagaggtagtgcaaattctctcgaagctcttgcgccagttcggc
agcaaggtgcctgtactcaccgctgcccacatgggcgccgaggacgctcagctgagtaag
ctccagacacaggtgtcgaacttgcagaagcaactggagggtaacatgcttaccacatcc
cctacgccagagctgcaagaagagtttgatcaatttaagagaaaggcagacctcgaggcc
caactagagctggtgaaaggtgagttagccggcatgggtaaggcggtcttctctgaggag
ctgaggcagatgatgcgtgtgctgcgtcgcctggactacattgacaaggataacatcatc
ctccgcaaggctcgtgtggcgtgcgagataacgacgacggatgagaacgaaatcttgctc
acggagcttctcttcaagggtgtgctgaactccatggagacggaaatgattgtggctctt
ttgtcctgccttgtcaacgtgcatcgtaccccagacggctttttgttgccgcaagagttt
gagcagccgctgaaggacctaaacgaaattgtgactcgcatcgccaccgttagcgccgaa
agcggactcatgcaagagaacagctcagtggaaaaggtaatgccgtcactcatggaggtc
acctacctctgggcaaagggggcgaagttcgttgacctcgtgagcaagacaaccgcgtac
gagggcgagatcgtgcgcatgatgcgtcgcctggaagagatgctgcgccagctagcctct
gcggcgcggtcgccagctatcggcagcatcgaattgcacgacaagttccttaagggcatc
caactcatcaagcgcgatattgtgtttgcgtcgtcgctgtacttgtag
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