Paenibacillus hexagrammi: L0M14_02630
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Entry
L0M14_02630 CDS
T10205
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phex Paenibacillus hexagrammi
Pathway
phex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0M14_02630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phex03019
]
L0M14_02630
03009 Ribosome biogenesis [BR:
phex03009
]
L0M14_02630
Enzymes [BR:
phex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L0M14_02630
Messenger RNA biogenesis [BR:
phex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L0M14_02630
Ribosome biogenesis [BR:
phex03009
]
Prokaryotic type
rRNA helicases
L0M14_02630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
CbiQ
SecA_DEAD
Cas3-like_C_2
DUF1722
Motif
Other DBs
NCBI-ProteinID:
UJF34148
UniProt:
A0ABY3SJF9
LinkDB
All DBs
Position
complement(588335..590038)
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AA seq
567 aa
AA seq
DB search
MSNGFASLGIREELVNQLKVNGVTEPTPIQHQSIPVLLSGSDVIAQAQTGTGKTLAFVLP
MLEIVNVNKPDVQALILTPTRELAIQITSELQKLAPVTGANVLAAYGGQDVERQLRKLQG
NIHIVVGTPGRLLDHLRRGSLNFYKLKMLVLDEADQMLHMGFLTEVQDIIAQTSTHRQTM
LFSATMPQQVRNLSKAYMRDPQEIQVQSKQVTLKEIEQVLIQTTDRGKQDALAEAILKYK
PYLAMIFCRTKRRASTLNEALQEKGFASDELHGDLSQAKREQVMKRFRDGKIELLVATDI
AARGLDVEGVTHVFNYDVPLDAESYIHRIGRTGRAGQTGVAVTFAAPRDMYHIELIEKGI
KMSLRREDAPRRVRISDTEEVSAGRGSARRGAGQPSSGRSADRSRQGGRGERGRRGEGRN
AEQNRGRGGRSVERGGRATGDSWSDARGSAARGGRGAERGGSAVGDAWSDSRGGAARGGR
GAERSGRPAADAWSDSRAGAARGGRGVERAGKPAADAWSDSRGGAARGGRGAERAGRPAA
DAWSDSRGGAARGGRGAERAGRPTADA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatggatttgcttcattaggtattcgcgaggaacttgttaatcaattaaaagtg
aacggtgttacggagccgactccaattcagcatcaatcgattcctgtgctgcttagcggt
tcggatgttattgcgcaagctcaaactggtacgggaaagaccctcgcctttgttctgccc
atgctcgaaatcgtaaacgtcaataagccggatgtacaggctttgattcttacgccaacc
cgggagctggccattcagattacgagcgagcttcagaagcttgcccctgttacgggcgct
aacgtattagctgcttatggcggacaggatgtagaaagacagctgcgaaagctgcaagga
aatatacatatagttgtaggaactcctggcagactgctcgaccatcttcgtcgtggatcg
ctgaatttttataagttgaaaatgcttgtgctggacgaagctgaccaaatgcttcacatg
ggctttttgaccgaggtacaggatatcatcgcccaaacctccactcaccgccaaaccatg
cttttctctgcaacgatgccacagcaggtaagaaacctgtcaaaagcttatatgagagat
ccgcaggagattcaggtacagtccaagcaggtaacgttaaaagaaatcgagcaagtgtta
attcaaactaccgatcgcggcaaacaggatgctttagcagaagctattcttaaatacaag
ccttatttggctatgattttttgccggaccaaacgcagagcttccacactaaatgaagcg
ctgcaggaaaaaggctttgcttccgatgagctacatggagacttatctcaagccaaacga
gagcaagtcatgaaacgtttccgtgatgggaaaattgagctcttggtagctacagatatc
gccgctcgcggccttgatgtggaaggtgtgacacatgtcttcaattatgatgtcccactg
gatgccgaaagctatatccaccgaatcgggcggacaggccgcgccggacaaaccggtgta
gccgtgacattcgcagccccaagagatatgtatcacatcgaattgatcgagaaaggcatt
aaaatgtcgctccgacgtgaagacgcacctagacgtgtccgcatctcggacacggaggaa
gtcagtgctggaagaggttcggcacgcagaggagcaggtcaaccatcaagcggtagaagt
gccgaccgaagccgacaaggaggacgcggtgagcgcgggcggcgcggcgaaggcagaaac
gcggagcaaaaccgcggtagaggcggacgcagtgttgagcgcggcggcagagcgacaggc
gactcttggagcgatgcacgtggaagcgcggcgcgcggcggacgtggtgctgagcgcgga
ggcagtgctgttggcgacgcttggagcgactcccgcggcggcgcggcgcgcggtgggcgc
ggtgcggaacgcagcggcagaccggccgcggacgcttggagcgactcccgcgccggcgcg
gctcgcggtgggcgcggtgtggaacgcgccggcaaaccggccgcggacgcttggagcgac
tcccgcggtggcgcggctcgcggcggacgcggtgcggaacgcgccggcagaccggccgca
gacgcttggagcgactcccgcggcggcgcggctcgcggcggacgcggtgcggaacgcgcc
ggcagaccgaccgcggacgcttga
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