Paenibacillus hexagrammi: L0M14_08100
Help
Entry
L0M14_08100 CDS
T10205
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
phex Paenibacillus hexagrammi
Pathway
phex02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phex00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L0M14_08100 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phex03021
]
L0M14_08100 (rpoD)
Transcription machinery [BR:
phex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L0M14_08100 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
UJF35088
LinkDB
All DBs
Position
1890524..1891639
Genome browser
AA seq
371 aa
AA seq
DB search
MANDQRTELETELTLDQVKDQLIEQGKKRSSLTYKDIMEKLAPFDQDPEQIDEFFEQLSE
LGIDVGNESDDESINPEDQEHDEFNFDDDLALPPGIKINDPVRMYLKEIGRVPLLSAEDE
VDLAKRIENGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDH
TKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPE
EIAKEMDLSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLK
EQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHP
SRSKRLKDFLE
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcaacgtaccgaattagagacagaattaaccttggatcaggtgaaggat
cagctcattgagcaggggaaaaagcgctcatctcttacttacaaagatattatggaaaag
ctcgctccctttgatcaggatccggaacaaatcgacgaatttttcgaacagctctcagag
ctgggaattgatgtaggcaacgaatcagatgatgagtccattaatccagaagatcaggag
catgatgagtttaattttgatgatgacctggcgctgccgcccgggattaaaattaacgac
cctgtgcggatgtatttgaaggaaatcggacgggtaccgcttttgtctgcagaagatgaa
gttgatttggctaagcgtattgagaacggcgatgaggaagccaagagaaggttggcagaa
gcgaacctaaggctggtcgttagtattgctaaacgatacgtaggcagaggaatgctgttc
cttgacttgattcaagagggcaatatgggcttaattaaagccgttgaaaagtttgaccac
accaaaggttataagtttagtacctatgcgacatggtggattcgtcaagcgattacgagg
gcgattgcggaccaagcaagaacaatccggattccagtacatatggtggaaaccataaat
aagctgatccgcgtatctcggcagcttttgcaagagttggggcgtgaacctactccggaa
gagatcgcgaaagagatggatctcagtacggacaaagttcgtgagattatgaagattgct
caagagccggtatcgctcgaaacaccaatcggtgaagaagacgattctcacttgggtgac
tttattgaagatcaggaggcattggcaccagctgatgcagcggcatatgagcttctgaaa
gaacaactggaagatgtactggacacgctaacagaaagagaagagaatgtgcttcgtctt
cgctttgggttggacgatggccggactagaactttagaagaagtaggtaaagtatttggc
gttactcgtgagaggattcgtcaaatcgaagccaaggcactgcgtaaattaagacatcca
agccgaagcaagcgattaaaagatttcttggaatag
DBGET
integrated database retrieval system
