Paenibacillus hexagrammi: L0M14_26355
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Entry
L0M14_26355 CDS
T10205
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
phex Paenibacillus hexagrammi
Pathway
phex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0M14_26355 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phex03019
]
L0M14_26355 (rnr)
03016 Transfer RNA biogenesis [BR:
phex03016
]
L0M14_26355 (rnr)
Enzymes [BR:
phex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
L0M14_26355 (rnr)
Messenger RNA biogenesis [BR:
phex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L0M14_26355 (rnr)
Transfer RNA biogenesis [BR:
phex03016
]
Prokaryotic type
tRNA degradation factors
L0M14_26355 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
CSD
OB_Dis3
S1_RRP5
OB_PDCD11
Motif
Other DBs
NCBI-ProteinID:
UJF33051
UniProt:
A0ABY3SIK0
LinkDB
All DBs
Position
complement(5763172..5766024)
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AA seq
950 aa
AA seq
DB search
MVNEQDILSFMQETAYKPMTYQELEKHFGVENATDFKEFLKILNNLEQEGLILRTRNDRY
GVPERMNLIRGKLQAHAKGFGFLIPEDRDQPDVYIHANDMNTAMNGDLILVRVTSKSPAG
GRMEGEVVRVVTRANSQIVGTFQSQETYAFVIPDDKRVTRDIFIPQHAFMGAVTGQKVVV
KLVSYPEGRAAAEGEVVEILGHKDDPGIDILAIVRKFQLPEAFPEEVLQEADAAPDTISE
EEIQGQGRRDLRNKRIVTIDGEDAKDLDDAVNVERLENGNYVLGVHIADVSYYVREGSAL
DREAYNRGCSVYLTDRVIPMLPHRLSNGICSLNPRVDRLTMSCEMEFDENLTVVRHDIFT
SVIKTSERMTYTNVRKLLTGEAEPEVLERYEYLMDDFKLMEELAMKLRSRRMKRGAIDFD
FEESKILVDEEGKPTDIIKRERSIAEMIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPD
MEKLFHFMEFITNFGYSVKGKGNSVHPRALQSLLEEIKGTTEETVISKVMLRSMKQARYD
SQSLGHFGLAAEYYSHFTSPIRRYPDLIIHRVIREVLESGVLSDQRTEYLAGRMDDIARQ
SSERERMAVEAERETEALKKAQFMLDKIGEEFEGIISSVTNFGIFVELENTVEGLIRLSD
LTDDYYHYHEMHHALVGERTSRTYRIGDQAKVRVARVNMDERTIDFEMVDMKPRSESRGG
FRGGDSRGGSRGGAARGGRGSGDRGRGAGDRERSGGGRGTGDRGRSGESRDSGAGERSSG
DSRGRGGKAGGGSKGGKPWGKSGKGGFVGAKAGARTGAGGAGPAAGGKGKENRDGFAGSG
KRSKDGKVRLGDAPAFGAAESQRNAAVGVEERGRGQHDSFESAGGAARERSGASDRELRG
GVEGAKRRALGAAGGKSGGSDWASGVNALAKGGRRRGTGGSSGGGKKRRK
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatgaacaagatatattaagctttatgcaagaaacggcgtataagccgatgacg
tatcaggagcttgagaaacattttggcgtggagaacgccaccgattttaaagaatttctc
aaaatcctcaacaatttggagcaggaaggtctcattctgagaacgcgcaacgaccgttac
ggcgtaccagagcgtatgaacttaattcgaggcaagctgcaagctcatgccaagggcttt
ggcttccttattcctgaggatcgggatcaaccggacgtgtacattcacgccaatgatatg
aataccgctatgaatggggatctcattctcgttagagtcacttcaaagagcccggcgggc
gggagaatggaaggcgaagtggttcgtgtcgtaacgagggcgaactcgcagatcgtgggg
acttttcaaagccaagaaacgtatgccttcgtaattcctgacgataagagggtaactagg
gatatctttattcctcagcacgctttcatgggcgcagttacggggcaaaaggtcgtcgtc
aagcttgtcagctacccggagggcagagctgcggcggaaggtgaagttgtcgagattctg
gggcataaggatgacccgggtattgatattttggctatcgtacgtaaatttcagctccca
gaagcgtttccagaagaggttcttcaagaagctgatgctgcaccggatacgattagcgaa
gaggagattcaagggcaaggccgtagagatttgaggaataagcggatcgtcacaattgat
ggtgaggatgccaaggacctggatgatgcggtgaatgttgagcgtctggagaacggtaac
tatgtgctaggtgtgcatattgccgatgtcagctactacgtgcgtgaagggtccgctttg
gaccgtgaagcttataatcggggctgctccgtctacctgactgatcgtgtcattccgatg
cttcctcatcggctttctaacggaatatgctcgctgaatccgcgagtggatcggcttacg
atgtcctgtgagatggagtttgacgagaacttaacagtggttcgccatgatatttttacc
agcgttattaaaacgagtgagcggatgacgtataccaatgtcagaaagcttctgacaggt
gaagcggagccggaagtgctcgagcgctacgagtatttgatggatgacttcaagctgatg
gaagagctggcgatgaagcttcgttcccgtcgtatgaagcggggagccattgattttgac
ttcgaggaatccaagattctcgtagatgaagaaggtaagccaaccgatattatcaaaaga
gagcgttccatcgctgagatgatcatcgaggaattcatgcttgctgccaatgaaacggtg
gccgagcatttccattggttgaaagtgccgtttctgtacaggattcatgaggatcccgat
atggagaagctgtttcacttcatggagttcattacgaatttcgggtattccgttaaaggc
aagggcaactcggttcaccctcgtgcgcttcaatccttgcttgaagaaatcaagggaacg
acagaagagacggttatcagcaaagtgatgcttcgttccatgaagcaggcgcgttatgat
tcccagagcttggggcatttcggattggccgcggaatattattcccactttacgtcgccg
atccgccgatatcccgatcttattattcatcgcgtgattcgtgaggtacttgagagcggg
gtgctatcggatcaacgtacggagtatttggctgggcgtatggacgatattgcccgtcag
tcctcggaacgtgagagaatggccgttgaggcggaacgggagactgaagcgctcaagaaa
gcccaattcatgcttgataaaattggtgaggaattcgaaggcatcatatccagcgtgacc
aacttcggtatcttcgtagagcttgaaaatacggtagaaggcttgatccgtttaagcgat
ctgaccgatgattattatcattatcatgaaatgcatcatgcgctggtcggggagagaact
tcccgtacttaccgaatcggtgatcaggccaaagtacgcgtagcccgcgttaatatggat
gagcgtaccattgattttgaaatggtggatatgaagcctcgcagtgagagccgcggcggg
ttccggggaggagattcgcgaggcggcagcagaggcggtgcggcccgcggtggacgtgga
agcggcgatcgcggtcgtggcgccggagaccgtgaacggagtggcggaggtcgtgggacc
ggagaccgcggtcgaagcggcgaaagtcgagatagtggagcaggtgaacggagtagcgga
gacagccgcggtcgtggcggtaaagccggcggtggcagtaagggcggcaagccatggggc
aaaagcggcaaaggtggctttgtcggcgcgaaggccggtgcgcggacgggtgcaggtggt
gcgggtccagctgcgggaggaaagggtaaggagaatagggacggctttgccggaagcggc
aagcgaagcaaggacggcaaggttcgtctgggcgacgcgcctgcctttggagctgcggag
tcccagaggaacgcagcagttggtgtggaagagcgaggacgaggtcagcatgactcgttc
gagagcgcgggaggcgccgcaagagagcgcagcggcgcttcggatcgagagcttcgcggc
ggtgttgagggcgcgaagcgaagggctttaggcgctgccggaggcaagagcggcggcagc
gattgggcgagcggcgtgaacgcgctcgccaagggcggacgccgccgcggaacgggcggc
agcagcggtggaggcaagaagcggcgcaagtag
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