Paenibacillus hexagrammi: L0M14_26810
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Entry
L0M14_26810 CDS
T10205
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phex Paenibacillus hexagrammi
Pathway
phex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L0M14_26810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phex03400
]
L0M14_26810 (mfd)
Enzymes [BR:
phex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L0M14_26810 (mfd)
DNA repair and recombination proteins [BR:
phex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L0M14_26810 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_16
AAA_22
SecA_DEAD
Tcp10_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UJF33119
LinkDB
All DBs
Position
complement(5847560..5851081)
Genome browser
AA seq
1173 aa
AA seq
DB search
MQALLQAFSADADFQTIMSGVRSEMKEQLVAGLTGSSRQVMIAALARELQRPLFIITHNM
FAAQKILEDLLECLSEEEVLLYPSQELMATEEAAASPEMLAQRIDVLTRLASGYRGVVIA
PYAGVRRLLPVKQVFEESRITVKVGDTIHLDDLLGRLTGLGYERVERVESKGEMSVRGGI
LDLYPLTTEHAIRIELFDVDVDSIRTFDVNDQRSIDKLEAITIPPCREIQADRKRLQSAA
QHAYELLQAQLEKMTDRTSKDNLLEGIGHDIELLREGQMFPGIYKYISLLYTERQTLMDF
MPKDSVLIIDEPARLLETAKQLERDEAEWMMHALQEGKSLPAFVLSKSYESLLHRRPFPT
IYTSLFLRQVAGVQPQNIVNFVCRVMQNFHGQMNLLKSEMERWKKNGSKVVLLANGEERS
ERVRRVFEDYQIDEPEIVDGNLQTGFEMPSLHVVVITEGEIFTQKQRKARKVEKKIENAE
RIKSYQELKLGDYVVHVNHGIGKYVGIGTLEVGGIHKDYLHIMYAGGDKLSVPIDQIDLI
QKYVGSEEKEPKVYKLGGADWARVKNKVRASVKDIADDLIKLYAERQATPGYGFSADSAY
QNEFEAMFPYDETRDQLRAIEEIKKDMEKSRPMDRLLCGDVGYGKTEVAVRAAFKAAIDG
KQVAVLVPTTILAQQHYETFRERFSGYPFNVQVLSRFRSKKEQSEVMKGVKKGTVDVVIG
THRLLSQDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLG
VRDLSVIETPPENRFPVQTYVVEYGPSLVREAIERELAREGQVYFLYNRVQGITQMADQI
SMMVPDARVTVAHGQMGEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDAD
KMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRD
LSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIAKRKQEMEGEEAAPQQDWITQIDIQL
DAYLPSDYIYDSMQKIEIYKKVAAIRTLEEAADLQDELVDRFGDLPQAVSNLLAVARLKV
YGSEYRIETISQKGDDYQIKVHADQNDKLDGQKLFSLSNRFEGRIKLVAGPQIHILVRCK
GLKPDESIKLVENFLVEYKEVLKTKGELQDVAK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagctttattacaggctttttctgcggatgccgattttcaaactattatgtcaggt
gtccgctccgagatgaaagagcagctcgtcgccgggctaaccggctcctctcgacaagtg
atgattgccgctttggcgcgagaattgcagcgtccgctattcatcattacccacaacatg
tttgccgctcagaagatactggaagatctgctggaatgcttgtccgaggaggaagtgctg
ctctatccgtctcaggagctaatggctacggaagaggctgccgctagtccggaaatgctg
gcccaacggattgatgtgctgactcgtttggcgtcaggctatcgcggtgtggtcatagcg
ccatacgccggtgtaagaagattgctgccggttaagcaagtgttcgaggaatcccgcatt
acggtgaaagtcggggataccattcatttggatgacttgctgggacgtctgacagggctc
ggatatgaacgagtggaacgagtggaatccaaaggcgagatgagtgttcgcggaggcata
ttggatttgtatccgctgactacagagcatgcaattcgtattgaactgtttgacgtggat
gtggattctattcgcacgttcgatgtgaacgaccagcgttccattgataaattagaggcg
ataacgatacctccgtgtcgggagattcaagcggatagaaagcggttacaatccgctgcg
cagcatgcctacgagttacttcaggctcagctcgagaagatgacggaccgaaccagtaaa
gataatttgctggaaggaatcgggcatgacattgaactgctccgcgaggggcaaatgttc
ccgggtatttataaatatatttcgttattatatacggaaagacagaccctcatggacttc
atgcccaaggattcggtgctcatcatcgacgagcctgcgcgtctgctcgagacagccaag
cagttggagcgggatgaagcggaatggatgatgcatgcactccaagaggggaagagcttg
ccggcttttgtgctgtctaaatcctacgaatcgctgctgcaccgcagaccgtttccaacg
atctatacgtctctctttctcaggcaggtggcgggcgttcaaccgcagaacatcgttaac
tttgtatgccgggttatgcagaattttcatggccagatgaatctcctcaagtcggagatg
gagcgatggaagaaaaacggcagcaaagtggtcttgctggctaacggcgaagagcggtcg
gagcgcgtgagacgtgtgttcgaggattaccagatcgatgagcctgaaattgtagatggg
aacttacagacgggattcgaaatgccgtcccttcatgtggttgtcattacggaaggcgag
attttcacccagaagcagcgtaaggcgcgcaaggtcgagaagaagattgagaatgccgaa
cgtatcaagagctaccaagagctgaagctcggcgattacgtcgttcacgtgaaccacgga
attgggaaatacgttgggataggaacgcttgaggtcgggggcattcataaagattatctt
cacatcatgtatgcaggcggagataaactgtccgttcctatcgaccaaatcgatcttatc
cagaagtatgtcggctcggaagagaaagagcctaaggtttataagctgggcggtgcggat
tgggcgcgagtcaagaacaaggtgcgcgcttccgtaaaggatatcgctgatgatctgatc
aaactgtatgcggaacgtcaagcaacgcccggttatggctttagcgcagacagcgcttat
cagaatgaatttgaagcgatgtttccttatgacgagacgcgcgaccagttgagggccatt
gaggaaatcaagaaggacatggagaagtcgcgtccgatggatcgcctattgtgtggagac
gtcggctacgggaaaaccgaggttgccgtgcgtgcggcctttaaagctgcgatagatggc
aagcaggtggccgttcttgtgcctactacgattctggcgcagcagcattatgaaacgttc
cgcgaacgcttttccggctacccgttcaatgttcaagtgttgagtcgtttccgctctaag
aaggaacagtcggaagtgatgaagggcgtcaagaaggggacggttgacgtcgtcatcggt
acgcatagacttttgtcgcaggatgtccaattcaaagatcttggactgctgattgtggac
gaggagcagcgttttggcgtatcccacaaggagaagttgaagcggctgaagaccaatgtg
gatgtactcactctcacagccacgccgatcccaagaacgctgcatatgtcgatgctgggc
gtacgcgatttgtcggtcattgaaacgccgccggagaatcgttttcccgtgcagacctac
gtggttgaatacggtccgtcgctagtccgtgaagccattgaacgcgagcttgcccgcgaa
ggacaggtgtacttcctgtataaccgtgtacaggggatcactcaaatggccgatcagata
tcgatgatggtacccgacgcacgggttaccgtggctcacggtcagatgggcgagcaggag
ctggagaaaacgattctggacttcctcgacggtgaatacgacgtgcttgtcagtacgagc
atcattgagacgggggtcgacatcccgaatgtaaataccctgatcgttcacgatgcggat
aaaatgggcttgtctcagctctatcagctgagagggcgtgtcggacgatccaatcgcata
gcctatgcgtatttcacctatcagcgggataaagtgctgacggaagtggcggaaaagcgt
ctacaggctatcaaagagtttacagaacttggctcaggctttaaaattgcgatgagggat
ttgtctattcgaggcgcgggtaatttgctcggagccgagcagcacggttttattgcgtcc
gtaggctttgacttgtactcgcagatgctggcggaagaaatcgctaagcggaagcaggag
atggaaggtgaggaggctgctccgcagcaggattggattacgcaaatcgacatccagctc
gatgcttatctgccctccgattacatctatgacagtatgcagaagattgagatttataag
aaagtggctgccattcgcacactggaggaagctgcggatctgcaagacgagctcgtcgac
cgttttggagatcttccgcaggctgtttccaatttgcttgccgtggctcgtttgaaagta
tacggttcggagtaccggattgaaacgatcagccaaaaaggggacgattaccagatcaag
gtacatgccgatcagaacgacaagctcgacgggcagaagctattctctctgtctaaccga
tttgaaggccgtatcaagcttgtagcggggccgcagattcacatccttgtccgctgcaag
gggcttaaaccggatgaatccatcaaattggtggaaaacttcttggtagaatacaaggag
gttttgaaaacgaagggagaattacaagatgtcgccaaataa
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