Phenylobacterium sp. NIBR 498073: O4N75_08130
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Entry
O4N75_08130 CDS
T10943
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
phey Phenylobacterium sp. NIBR 498073
Pathway
phey02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phey00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
O4N75_08130 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phey03021
]
O4N75_08130 (rpoD)
Transcription machinery [BR:
phey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
O4N75_08130 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Com_YlbF
Motif
Other DBs
NCBI-ProteinID:
WGU41683
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Position
1605807..1607750
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AA seq
647 aa
AA seq
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MSTNTAEAETTETTGGDGPLLDLTDAGVKKFIKQAKARGYVTMDELNKVLPSEEVTSEAI
EDTLAMLSEMGVNVVEAEEDAEGGEVAVREETAVVETTKEPAYDRTDDPVRMYLREMGSV
ELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGSGRILLREVIDLEQTY
GGANAAAAELAGGAEGESEEEETTEDGEAVAKAEGADDDDDFDDGAGPTISAMEGELREG
VMATLDAIASEFDSFRALQEKLVGKRLKGEDLSDADRKAYTSASLAIVQHLKTLKLNNNR
IEALVEQLYAINKRLMGLEGRLLRLADSYGISRSEFLKAYFGQELSPNWTDQVKPLGVRW
TKFVENDAGQIGDIRAEVAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRL
VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
ARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPIS
LETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIG
MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaacacggctgaagcggaaaccacggaaacgactggcggcgatggtccgctg
ctcgacctcaccgacgccggcgtaaagaagttcatcaagcaggccaaggcccgcggctac
gtcaccatggacgagctgaacaaggtcctgccctctgaggaagtcacctccgaggcgatc
gaagacaccctcgccatgctctcggagatgggcgtcaacgtcgtcgaggccgaagaagac
gccgaaggcggcgaggtcgccgttcgcgaggaaaccgccgtcgtcgagacgaccaaggag
ccggcctacgaccgcaccgacgacccggtgcggatgtacctgcgcgaaatgggctcggtg
gaactgctctcgcgcgagggcgaaatcgccatcgccaagcgcatcgaggccggccgcgac
acgatgatccgcgggctgtgcgaaagcgccctgacgttcgaagccatcatggtctggcgc
gaggagctcggctccggccgcatcctgctgcgcgaggtcatcgacctcgaacagacctac
ggcggcgccaacgccgcggcggccgaactggccggcggggctgaaggcgagagcgaagaa
gaagagaccaccgaagacggcgaggccgtcgccaaggccgagggcgccgacgacgacgac
gacttcgacgacggcgccggtccgacgatcagcgccatggaaggcgagctgcgcgaaggg
gtcatggcgaccctcgacgccatcgcctcggagttcgactcgttccgcgcgctgcaggaa
aagctggtcggcaagcgcctgaagggcgaagacctctcggacgccgaccgcaaggcctac
accagcgcctcgctggccatcgtccaacacctgaagacgctgaagctgaacaacaaccgc
atcgaggcgctggtcgagcagctctatgcgatcaacaagcgcctgatgggcctggaaggc
cgcctgctgcgtctggcggacagctacggcatttcgcgctcggagttcctcaaggcctat
ttcggccaggagctgtcgccgaactggaccgaccaggtgaagccgctgggcgtgcgctgg
accaagttcgtcgagaacgacgccggccagatcggcgacatccgcgccgaggtcgccgcc
ctggccactgaaaccggcgtgccgatcgacgactaccgccgtatcgttcagaccgtccaa
aagggcgagcgcgaagcgcgtcaggccaagaaggaaatggtcgaggccaacctgcgcctc
gtgatctccatcgccaagaagtacaccaaccgcggcctgcagttcctggacctgatccag
gaaggcaacatcggcctgatgaaggccgtcgataagttcgagtaccgccgcggctacaag
ttctcgacctatgcgacctggtggatccgtcaggcgatcacccgctcgatcgccgaccag
gcccggaccatccggatcccggtgcacatgatcgagacgatcaacaagatcgtccgcacc
agtcgccagatgctgcacgagatcggccgcgagccgaccccggaggaactggccgaaaag
ctggccatgccgctggaaaaggtccgcaaggtcctgaagatcgccaaggagccgatctcg
ctcgaaaccccgatcggggacgaggaagacagccacctgggcgacttcatcgaggacaag
aacgcgatcctgccgatcgacgcggcgatccagtcgaacctgcgcgagacgaccacccgc
gtgctggcgtcgctgacgccgcgcgaggagcgcgtcctgcgcatgcgcttcgggatcggc
atgaataccgaccacaccctcgaagaggttggtcagcagttcagcgtcacccgcgaacgg
atccgtcagatcgaggccaaggcgcttcgcaagctgaagcacccgtcgcgttcgcggaag
ctgcgcagcttcctcgacagctaa
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