Phenylobacterium sp. NIBR 498073: O4N75_17030
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Entry
O4N75_17030 CDS
T10943
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phey Phenylobacterium sp. NIBR 498073
Pathway
phey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O4N75_17030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phey03019
]
O4N75_17030
03009 Ribosome biogenesis [BR:
phey03009
]
O4N75_17030
Enzymes [BR:
phey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O4N75_17030
Messenger RNA biogenesis [BR:
phey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O4N75_17030
Ribosome biogenesis [BR:
phey03009
]
Prokaryotic type
rRNA helicases
O4N75_17030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
Tap-RNA_bind
Motif
Other DBs
NCBI-ProteinID:
WGU39334
LinkDB
All DBs
Position
complement(3404591..3406459)
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AA seq
622 aa
AA seq
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MAFPNIHPALARALASQGYEEPTPVQAAVLTEEAEGRDLLVSAQTGSGKTVAFGLAAGPT
LLGEEQWFGQAGPPLALAIAPTRELAMQVARELSWLYGQAGAKVETCVGGMDPRREQRAL
AAGCHILVGTPGRLKDHLERGNLDLGALRVLVLDEADEMLDMGFREDLEEILDSSPVDRR
TLLFSATIAKDIAALAKRYQRNALRIDTVRRDEPHGDIEYRAVRVAPNEVELAVVNVLRF
FEAPGALVFCNTRDGVRHMHAALRERGFQVVGLSGELGQRERSEALQALRDGHARVCVAT
DVAARGLDLPDLGLVIHADLPINKPALLHRSGRTGRAGKKGTSVLLVPYTRRRKAEQLLA
SAGVDVHWQGPPTADEIKAKDQARMLEDPILTEEPAEEDLALARLVLETRSAEQVAAALM
RLYRQRLPAPEELYDDARMRDAQARDRERPQRGDRWEPSDRDDGPVGRPPRLAPEDVSWF
RITVGRAKNADPKWLIPMICRLGHITKKDIGSIRIFDRETKFEISKEAEAKFAAAVKATA
DDEIQIEASSPPGAAQPRGPHRKGPPAGDGKPFRKGPPGEGKPFRKGPPREGGKPAFKGP
PGAPGPKGGKPPWKKKGVEQRK
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggccttccccaacattcaccccgccttggcgcgcgcgctcgcgagccagggatacgaa
gaacccacccccgtccaggcggcggtgctgaccgaagaggccgagggccgcgacctgctg
gtctcggcccagaccggctcgggcaagacggtggcgttcggcctggcggccgggccgacc
ttgctgggcgaagagcagtggttcggccaggccgggccgccgctggccctggccatcgcc
ccgacccgtgaactggcgatgcaggtcgcccgcgaactgagctggctctacggccaggcc
ggcgcgaaggtcgagacctgcgtcggcggcatggatccgcgccgcgaacagcgcgccctg
gccgccggctgtcacatcctggtcggcacgccgggccgcctgaaggatcacctggagcgc
ggcaacctcgatctcggcgccttgcgcgtcctcgtcctcgacgaggccgacgagatgctc
gacatgggcttccgcgaagacctggaggagatcctcgactcctcgccggtcgaccgacgc
acgctgctgttctcggcgaccatcgccaaggacatcgccgccctggccaagcggtaccag
aggaacgccctgcgcatcgataccgtgcgccgcgacgaaccgcacggcgacatcgagtac
cgcgccgtccgcgtggcgccgaacgaggtcgaactggccgtcgtcaacgtgctgcgcttc
ttcgaggcgcccggcgcgctggtgttctgcaacacgcgcgacggcgtgcgccacatgcat
gcggctctgcgcgagcgcggcttccaggtcgtcggcctgtcgggcgagcttggccagcgt
gagcgctccgaagcgctgcaggcgctgcgcgacggtcatgcccgggtttgcgtggccacc
gacgtcgccgcccgcggcctcgacctgcccgacctcggcctggtgatccacgccgacctg
ccgatcaacaagccggccctgctgcaccgttcgggccggaccggccgcgcgggcaagaag
ggcacgtccgtcctgctggtgccctacacccgccgtcgcaaggccgagcagctgctggcc
tcggccggggtcgacgtccattggcagggcccgccgaccgccgacgagatcaaggccaag
gaccaggcccggatgcttgaggacccgatcctcaccgaggagccggccgaagaggatctg
gccctggcgcgtctggtgttggagacccgcagcgccgaacaggtggccgcggccctcatg
cggctctaccgccagcgcctgccagcgccggaagaactctacgacgacgcgcggatgcgc
gacgcccaggcccgcgaccgcgagcgcccgcagcgcggcgaccgctgggagccctccgac
cgtgacgacggcccggtcggccgcccgccgcgtctggcgcccgaggacgtctcctggttc
cgcatcaccgtcgggcgggccaagaacgccgaccccaagtggctgatcccgatgatctgc
cgcctgggccacatcaccaagaaggacattggctcgatccggatcttcgatcgcgagacc
aagttcgagatctccaaggaagccgaagccaagttcgccgcggcggtgaaggcgacggcc
gacgacgaaatccagatcgaggcctccagcccgccgggcgcggcccagccgcgcggcccg
caccgcaaggggcctccggccggagacggcaagcccttccgcaagggaccgcccggcgag
ggcaagccgttccgcaaggggcccccgcgcgagggcggcaaacccgccttcaagggcccg
ccgggcgcgcccggtcccaagggcggcaagccgccgtggaagaagaagggcgtcgagcag
cgcaaatag
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