Phenylobacterium sp. NIBR 498073: O4N75_20715
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Entry
O4N75_20715 CDS
T10943
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
phey Phenylobacterium sp. NIBR 498073
Pathway
phey03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
O4N75_20715 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phey03400
]
O4N75_20715 (ligD)
Enzymes [BR:
phey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
O4N75_20715 (ligD)
DNA repair and recombination proteins [BR:
phey03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
O4N75_20715 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WGU40030
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All DBs
Position
4178466..4181039
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AA seq
857 aa
AA seq
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MANKLARYQSMRDFSRTAEPSGRAKVKPAAHLRYVIQKHAATRLHYDFRLELDGVFKSWA
VTKGPSLDPHERRLAVEVEDHPLDYGDFEGTIPKDQYGGGSVMLWDRGYWAPEPGTDPHQ
GLEKGDLKIVLAGDRLHGGFVLVRMKTDRDGGDKTNWLLIKHRDQFAREGDDDALLKDND
TSVASGRSMADIAAGAGKAPKPFITTAKGKADGVWQSKPRGAPASAPPPKPAKRKTAAMP
DFIEPQLCRTQDRPPNGSGWAHEVKFDGYRMQLRVADGAARLRTRKGLDWTERFQALADA
AAGLPDCILDGEAVALDGDDKLSFAALQAALSDGRSDELIYYAFDLLFEDGEDLRELPLS
ERKARLKTLLDGRDDAIRYVEHFETSGEAVWRSAQRLDLEGIVSKRLAAPYRSGRSDTWS
KAKLRPGDEVVIGGWTGEKGRLRSLLVGRYQDGALVYAGRVGTGFSSAVVSRLLPRLEAV
ASADSPFSGPGAPRKDGDINWARPELVAEIEFAGYTDGGAVRQGAFKGLREDKPAGEVET
EAAALSNPDKPAQRSKRMGDSIVMGVTISSPDKALWPNSADSDAPVTKLELARYLEAVGP
WMMPHIEGRPCSIIRIPDGLGGEQFFQRHAGKGASPLLSQVEVFGDHAAYLQVDRVEALA
ALAQIGAAEYHPWNCRPHAPETPGRLIFDLDPGPDVDFDAVVAAARDVRDRLEDLGLIAF
CKTTGGKGLHVVTPLAPSKGELDWPTAKAFAKKLCEQMAADEPALYVANMAKKLRQGRIF
LDYLRNDRLSTAVAPLSPRARDGATVSFPLTWSQVRAGLDPRRYTIRTAPALLAKTNAWA
DYAEGERSLEAAIKRLS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaagctcgcccgctatcagtccatgcgggacttcagtcggacggccgaaccg
agcggccgggcgaaggtcaaaccggcggcccacctgcgctacgtgatccagaagcacgcc
gcgacccggctgcattacgacttccgactggaactggacggggtcttcaagtcctgggcg
gtgaccaagggcccctccctcgacccccacgaacgtaggctggccgtcgaggtcgaggac
cacccgctcgactacggcgatttcgagggcacgatccccaaggaccagtacggcggcggc
agcgtcatgctgtgggaccgcggctactgggcgccagagccgggaaccgacccgcaccag
ggcctcgagaagggcgacctgaagatcgtgctggcgggcgaccgcctgcacggcgggttc
gtcctggtccgcatgaagaccgaccgcgatggcggcgacaagaccaactggctgctgatc
aagcaccgcgaccagttcgcccgcgaaggcgacgacgacgccctgctcaaggacaacgac
acgtccgtagcctccggccgctccatggccgacatcgccgcaggcgcgggcaaggcgccc
aagccgttcatcaccaccgccaagggcaaggccgacggcgtctggcagtccaagccgcgc
ggcgcgccggcgtccgcccccccgcccaaaccggccaagcgcaagaccgctgcgatgccg
gacttcatcgaaccgcagctctgccgcacgcaggacaggccgccgaacggctcgggctgg
gcgcatgaagtgaagttcgacggctaccgcatgcagctgcgcgtcgccgacggcgcggcc
cggctgcgcacgcgcaaggggctggactggaccgaacgctttcaggccctcgccgacgcc
gccgccggcttgcccgactgcatcctcgacggcgaggccgtggccttggacggcgacgac
aagttgagctttgcggcgttgcaggccgcgctgtccgacggacgcagcgacgagctgatc
tactacgccttcgacctgctgttcgaggacggcgaggacctgcgcgagctgccgcttagc
gagcgaaaggcgcggctcaagaccttgctcgacgggcgcgacgacgccatccgctacgtc
gagcacttcgagacgtccggcgaggcggtctggcgctcggcccagaggctcgacctggaa
ggtatcgtctccaagcgcctggccgcaccttatcgatcgggccgcagcgacacctggagc
aaggccaagctgcgccccggcgacgaggtggtgatcggcggctggaccggcgagaagggc
cgcctgcgctcgctgctggtcggacgctaccaggacggcgcattggtctatgccggccgg
gtcggaaccggcttcagcagcgccgtggtcagccgccttctgccccgactggaagcggtt
gcgagcgccgacagtccgttcagcggccccggagcgccgcgcaaggacggcgacatcaac
tgggcgcggcccgaactggtcgccgaaatcgagttcgccggctacaccgacggtggcgcg
gtgcggcaaggcgcgttcaagggcctccgcgaggacaagccggccggcgaggtcgagacc
gaagccgccgccctgtccaatcccgataagccggcgcagcggagcaagcgcatgggcgat
tcgatcgtgatgggcgtgaccatctccagccccgacaaggcgctgtggccgaactcggcc
gacagcgacgcgccggtcaccaagctcgagctcgcacgctacctggaggcggtcggcccg
tggatgatgccgcacatcgaggggcggccctgctcgatcatccgcattccggacgggctg
ggcggggagcagtttttccagcgccacgccggcaagggcgcctcgccgctgctctcgcag
gtcgaggtgttcggcgaccacgccgcctatctgcaggtcgaccgcgtcgaggccctggcc
gccctggcccagatcggcgcggccgagtaccacccctggaactgccgcccgcacgcgccg
gagacccccggacggctgatcttcgacctcgaccccggccccgacgtcgacttcgacgcc
gtggtcgcagcagcccgcgacgtgcgcgaccggctggaggacctggggctcatcgccttc
tgcaagaccaccggcggcaagggcctgcacgtggtgacgccgctggccccgtcgaagggc
gagctggactggccgacggccaaggccttcgccaagaagctctgcgagcagatggcggcc
gacgagccggccctctatgtggcgaacatggccaagaagctgcgccaggggcggatattc
ctggactacctgcgcaacgaccggctttcgacggcggtcgcgccgctctccccccgcgcc
cgcgacggcgccacggtgtcgttcccgctgacctggagccaggtccgcgccggcctcgat
ccgcgccgctacacgatccgcaccgcgccggcgctgctggccaagaccaacgcctgggcc
gattacgccgagggcgagcggtcgctggaagccgcaatcaagcgtctgagctga
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