Ectopseudomonas hydrolytica: NLY38_05980
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Entry
NLY38_05980 CDS
T08519
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
phf
Ectopseudomonas hydrolytica
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phf03016
]
NLY38_05980
Enzymes [BR:
phf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NLY38_05980
Transfer RNA biogenesis [BR:
phf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NLY38_05980
Prokaryotic type
tRNA splicing ligases
NLY38_05980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CHDCT2
Motif
Other DBs
NCBI-ProteinID:
UTH32857
LinkDB
All DBs
Position
complement(1291097..1292323)
Genome browser
AA seq
408 aa
AA seq
DB search
MSNKTYNLLEVANGKPIKLWTQGVPVEEDAKQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLMAHDLPDNLAGLRAAIEKAVPHGRSNTRA
GRDRGAWENVPETADHAWSALSERFKAITDKYPRLEKTNNRKHLGTLGTGNHFIEVCLDE
AGRVWFMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPHRDLAYFEEGSRHFDDYVEAV
GWAQDFAKQNRALMMHAVIAAARGVIAKPFEVALEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAKKGELGIIPGSMGAKSYIVRGLGNEEAFCSCSHGAGRTMSRTKAKKVFTVEDQIRA
TAHVECRKDADVIDEIPMAYKDIDQVMDAQRELVEVVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaagacctacaacctgctggaagtcgccaatggcaagccgatcaagctgtgg
acgcaaggcgttccggtggaggaagacgccaaacagcaattgatgaacaccgcgaagatg
cccttcatcttcaaacacctggccgtgatgccggacgtgcacctgggtaagggctcgacc
atcggcagcgtgatccccacggtcggcgcgatcatcccggccgcagtcggggtggatatc
ggctgcggcatgatcgccgcgcgcacctcgctgatggcgcatgacctgccggataacctg
gccggtctgcgcgccgccatcgagaaagccgtgccgcacgggcgcagcaacacgcgggcc
ggtcgcgaccggggtgcctgggaaaacgtgccggagacggccgaccacgcctggtcggcg
ctgagcgagcgtttcaaggcgatcaccgacaagtacccgcgtttggagaaaaccaacaac
cgcaagcacctgggaaccctgggtaccggcaaccatttcatcgaggtctgcctggatgaa
gcaggccgcgtctggttcatgctccacagtggctcgcgcggtgtgggtaacgccatcggc
aacctgttcatcgaactggcccaggccgatatgcgccagcacatcgccaacctgccgcac
cgtgacctggcctacttcgaggaaggcagccggcacttcgatgattatgtggaggccgtg
ggctgggcgcaggactttgccaagcagaaccgcgcactgatgatgcacgcagtgatcgcg
gcggcacgcggcgtgatcgccaaaccgttcgaggtggcactggaggcggtgaactgccac
cacaactacgtgcagaaggaacgtcacttcggtgaagaggtgctggtaacccgtaaaggc
gcagtgtcggcgaaaaagggcgaactgggcatcatccccggctccatgggcgccaagagc
tacatcgtgcgcggcctgggtaacgaggaagcgttctgctcctgcagccacggcgccggg
cgcaccatgagcagaaccaaggcgaagaaggtcttcaccgtcgaagatcagatccgcgcc
acggctcatgtggaatgccgcaaggacgccgacgtgatcgacgaaatcccgatggcctac
aaggatatcgaccaggtaatggacgcccagcgtgagctggtggaagtggtgcacaccctg
cgtcaggtggtgtgcgtgaaaggatag
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