Ectopseudomonas hydrolytica: NLY38_06340
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Entry
NLY38_06340 CDS
T08519
Name
(GenBank) OprD family porin
KO
K18093
imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
Organism
phf
Ectopseudomonas hydrolytica
Pathway
phf01501
beta-Lactam resistance
phf02020
Two-component system
Module
phf_M00745
Imipenem resistance, repression of porin OprD
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NLY38_06340
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
NLY38_06340
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
phf02000
]
NLY38_06340
01504 Antimicrobial resistance genes [BR:
phf01504
]
NLY38_06340
Transporters [BR:
phf02000
]
Other transporters
Pores ion channels [TC:
1
]
NLY38_06340
Antimicrobial resistance genes [BR:
phf01504
]
Gene sets
beta-Lactam resistance modules
Imipenem resistance, repression of porin OprD [MD:
M00745
]
NLY38_06340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OprD
Motif
Other DBs
NCBI-ProteinID:
UTH32926
LinkDB
All DBs
Position
complement(1369839..1371113)
Genome browser
AA seq
424 aa
AA seq
DB search
MQVMKWSVIALAVAAGTSQMAVASSQSESKGFIEDSSFNIFNRVLYMNRDFRNGPNTAGT
GDNGYREETGLGIRLLYESGFTQGTVGVGVDAHSLSSIKIDSGRGRYGNGLFAKTDDGRG
DDTQTEVGGAIKFRISDTVLKYGSQFTASPVFSTDDSRILPEVATGTYLVSNEIEGLELS
AGRFTAMSSQTGTSRDDINGKGEAGLKYANIVGASYSFNDDLSAAFHASDVEDYWKKYYG
NLNYNLPLAEEQALNFDFNIYKTDYDKTYTNTVSDEDNTIWSLAAAYSMGAHTFTLAHQR
STGDRGYDYGVDGGGTIWLSNSVQFSDFNAKDEKSWQARYDINMASYGVPGLSFMTRYIR
GTDMDVGTGSNERERELDIEAKYVIQEGAAKDLSFRVRQAFYRNSFEGDLNDFRLIVEYP
LSVL
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtgatgaagtggagcgtaatcgccctggcagtagccgcgggtacctctcagatg
gcagtggcttccagccagtccgaatccaaaggcttcattgaagacagcagcttcaacatc
ttcaatcgtgttctgtacatgaaccgcgatttccgcaatggtcctaacacagctggtact
ggcgacaacggttaccgcgaagaaaccggcctgggcattcgcctgctgtacgagtccggc
ttcacccagggcaccgttggcgtgggcgttgacgcacactcgctgagcagcatcaagatc
gacagcggtcgcggccgctacggcaatggcctgttcgcaaagaccgatgacggtcgtggc
gacgacactcagactgaagttggcggcgccatcaagttccgtatctccgataccgttctg
aaatacggcagccaattcaccgccagcccggtattctccaccgacgacagccgtatcctg
ccggaagtcgccactggtacttacctggtaagcaacgaaatcgaaggtctggaactgagc
gctggtcgcttcactgccatgagcagccagaccggcaccagccgcgatgacatcaacggc
aaaggcgaagctggcctgaagtatgccaacatcgtaggcgcttcctactccttcaacgac
gatctgagtgcggcattccacgcctccgatgtagaagactactggaaaaaatattacggc
aatctgaactacaatctgccgctggccgaagagcaagcactgaacttcgacttcaacatc
tacaaaaccgattacgataaaacttacaccaacactgtaagcgacgaagacaacaccatc
tggagcttggctgctgcctactccatgggcgctcatacctttaccctggcacatcagcgt
tcgaccggcgatcgcggatatgattacggtgtagatggcggcggcaccatctggctgtct
aactcggttcagttttctgacttcaatgccaaagacgagaagtcctggcaggctcgctac
gacatcaacatggcctcctacggtgtaccgggcctgagcttcatgacccgctacatccgc
ggcaccgacatggatgtaggtactggcagcaacgagcgcgagcgcgagctggatatcgaa
gccaagtacgtgatccaggaaggcgccgccaaggatctgtccttccgcgttcgtcaagcg
ttctatcgcaactccttcgagggcgacctgaacgacttccgcctgatcgtcgagtacccg
ctgagcgttctgtaa
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