Ectopseudomonas hydrolytica: NLY38_07500
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Entry
NLY38_07500 CDS
T08519
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
phf
Ectopseudomonas hydrolytica
Pathway
phf03030
DNA replication
phf03430
Mismatch repair
phf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLY38_07500 (dnaE)
03430 Mismatch repair
NLY38_07500 (dnaE)
03440 Homologous recombination
NLY38_07500 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phf03032
]
NLY38_07500 (dnaE)
03400 DNA repair and recombination proteins [BR:
phf03400
]
NLY38_07500 (dnaE)
Enzymes [BR:
phf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NLY38_07500 (dnaE)
DNA replication proteins [BR:
phf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NLY38_07500 (dnaE)
DNA repair and recombination proteins [BR:
phf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NLY38_07500 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
UTH33147
LinkDB
All DBs
Position
1606088..1609618
Genome browser
AA seq
1176 aa
AA seq
DB search
MTQAFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAG
VKPICGADIWMASAEEDGPLTRLTLLAMNPKGYRNLTELISRGWAEGQSNDLVIIQRDWV
KDAAEGLIALSGAREGEVGLALLAGDEALAETRLREWMAVFPDRFYLEVQRTSRVGDEEY
LHAAVALADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRHYSDQQYLK
TPAEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGIDDYLRHASFEGL
EERLQVLLPKDTPDYEAKKQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVG
PGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYVA
EKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPFEVGMTLEKAYEMEE
PLREFLKNDEEAQEIWDMSLKLEGVVRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVT
QFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGASDEELVNIDFIPLDDKKT
YDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFINRKH
GRAELSYPHPDYQYAGLEPVLKPTYGVILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKK
PEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKA
HYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNVSEFKFTVNDDGRIVYGLG
AVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLKRINKRTLEALIRSGALDRLGPYYQ
DELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGGLFAEPEADVYANHRK
ARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVELKPARDTQTIAGMIVNL
RVMKNKKGDKMGFITLDDRSGRIEASLFADAFASNQALLQNDALVVVEGEVSNDDFSGGL
RLRAKRVMSLEEARTGLADSLRVRVASEALKGDRLRWLAELCSKHRGACPVTVDYSGDEA
RALLQFGDAWRIDPADTLIQALRDQFGRDNVFLHYR
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagctttcgtccacctgcgtctgcacaccgaatactccctggtcgatggcctg
gtgcgggtcaaaccgctgatcaaggccgtggccggggccggcatgccggcggttgcggtc
accgacatgagcaacatgtgctcgctggtgaagttctacaagacggccatgggcgccggg
gtcaagccgatctgcggcgccgatatctggatggccagcgccgaggaagacggcccgctg
acgcgcctgaccctgctggcgatgaaccccaagggctaccgcaacctcaccgagctgatt
tcccgcggctgggccgaggggcagagcaacgatctggtgatcatccagcgtgactgggtc
aaggacgcggccgaaggcctgatcgcgctgtccggcgcgcgcgaaggcgaagtcggcctg
gcgttgctggccggtgacgaagccctggccgaaacgcgcctgcgcgagtggatggcggtg
ttcccggaccgcttctatctggaagtgcagcgcaccagccgtgtcggcgacgaggaatac
ctgcatgccgccgtggcgttggccgatcgcgtcgaggcgccgctggtggcgaccaacgac
gtgcgcttcatcaagcaggacgacttcgaggcgcacgaaacccgcgtctgcatcggcgag
ggccgtaccctggatgacccgcgccggccgcggcattactccgaccagcagtacctcaag
accccggcggaaatgtgggagctgttctccgatctgccggaagccctggaaaacaccgtc
gagatcgccaagcgctgcaatatcgatgtgcagctgggcaagtacttcctgccggacttc
ccgacgcccaacggcatgggcatcgacgactacctgcgtcatgcctccttcgagggcctg
gaggagcgcctgcaggtcctgctgcccaaggacacgccggattacgaggcgaagaagcag
gtctacgtcgaccgcctcaacttcgagctggacatcatcatccagatgggtttccccggt
tacttcctgatcgtgatggacttcatccagtgggccaagaacaacggcgtgccggtcggc
ccgggccgtggttcgggtgccggctcgctggtggcctacgtgctgaaaatcaccgacctg
gatcccctggcctacgacctgctgttcgaacgcttcctcaaccccgagcggatttccatg
cccgacttcgacgtcgacttctgcatggacggccgcgaccgggtgatcgactacgtggcc
gagaaatacgggcgtaacgcggtcagccagatcatcaccttcggctccatggcggccaag
gcggtggtgcgcgacgtggcgcgggcgcagggcaagtcctacggcctggccgatcgcctg
tcgaagatgatccccttcgaagtgggcatgaccctggagaaggcctacgagatggaggag
ccgctgcgcgagttcctcaagaacgacgaggaagcccaggaaatctgggacatgtcgctc
aagctcgaaggcgtggtgcgcggcaccggcaagcacgccgggggcgtggtgatcgcgccg
accaaactcaccgacttctcgccgatcgcctgtgacgaggagggcggtggcctggtgacc
cagttcgacaaggacgatgtcgagcaggccggcctggtcaagttcgacttcctaggtctg
cgtaccctgaccatcatcaagtgggcgatggagaccatccaccgcatccagaagcgtgat
ggtgcctcggacgaggagctggtcaacatcgacttcatcccgctggatgacaagaaaacc
tacgacatgctgcagaaggcggagaccaccgcggtcttccagctcgaatcgcgcggcatg
aaggagctgatcaagaagctcaagcccgactgcctggaagacatgatcgcactggtggcg
ctgttccgtcccggccccctgcagtccggcatggtggatgacttcatcaaccgtaagcac
ggccgcgccgagctgtcctatccgcacccggattaccagtacgcaggcctggagccggtg
ctcaagcccacctacggcgtcatcctgtaccaggaacaggtgatgcagatcgctcaggtg
atggctggctacaccctcggcggtgcagacatgctgcgtcgcgccatgggcaagaagaag
cccgaggagatggccaagcagcgcggcggcttcatcgagggctgcgccaacaacggcatc
gatgccgacctggccggcaacatcttcgacctggtggaaaagttcgccggttacggcttc
aacaagtcgcactccgccgcctacggcctggtgtcctaccagaccgcctggctcaaggcg
cattacccggcgccgttcatggccgcggtgctgtcggcggatatgcacaacaccgacaag
gtggtgatcctggtggaagagtgccgcaacatgaagttgcgcatcgatccgccggacgtg
aacgtctccgagttcaagttcaccgtcaacgacgacggccgcatcgtctacggcctcggt
gcggtcaagggcgtgggcgaggggccggtcgaggccatcgtcgaatgccgcgccgaaggc
gggccgttcaaggacctgttcgacttctgcaaccgcgtcgacctcaagcgcatcaacaag
cgcaccctcgaagcgctgatccgcagcggcgcgctggatcgcctcggcccctactaccaa
gacgagctcaaggcctaccaggccagcgtggacaagaaccgcgcggtgttgctggcgtcc
atggaagaggccgtgcagtccgccgagcagaccgcgcgcagcgccgagagcggccatatg
gacctgtttggcggcctgttcgccgagcccgaggcggatgtctatgccaaccaccgcaag
gcccgcgaactgccgatcaaggaacgcctgaaaggcgagaaggacaccctgggcatctac
ctgtccggccaccccatcgacgaatacgaaggcgagattcgccgcttcgcccgccagcgc
atcgtcgagctcaagcccgcgcgcgacacccagaccatcgctgggatgatcgtcaacctg
cgggtgatgaagaacaagaagggcgacaagatgggctttatcaccctggacgaccgctcc
gggaggatcgaggcttcgttgttcgccgatgccttcgccagtaaccaggcgctgctgcag
aacgatgcgctggtggtggtcgaaggcgaagtcagcaatgacgacttctccggtggcctg
cgtctgcgcgccaagcgcgtgatgagcctggaagaggcgcggaccggtctggccgacagc
ctgcgcgtgagggtcgccagcgaagcgctcaagggcgatcgcctgcgctggctggccgaa
ttgtgcagcaagcacaggggcgcctgcccggtgaccgtcgactacagtggcgatgaggca
cgcgccttgcttcaattcggcgatgcctggcgaatcgacccggccgacactttgattcag
gcattgcgtgaccagttcgggcgcgacaacgtctttttgcactaccgctga
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