Ectopseudomonas hydrolytica: NLY38_14135
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Entry
NLY38_14135 CDS
T08519
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
phf
Ectopseudomonas hydrolytica
Pathway
phf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NLY38_14135 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phf03400
]
NLY38_14135 (recD)
Enzymes [BR:
phf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NLY38_14135 (recD)
DNA repair and recombination proteins [BR:
phf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NLY38_14135 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Helicase_RecD
AAA_22
Viral_helicase1
SH3_13
UvrD-helicase
AAA_16
SLFN-g3_helicase
TraI_hel_assoc_N
nSTAND3
Mg_chelatase
AAA_28
NTPase_1
AAA_7
ATPase
PhoH
DEAD
T2SSE
AAA_29
NACHT
AAA_25
TrwB_AAD_bind
AAA_17
AAA_24
GvpD_P-loop
Motif
Other DBs
NCBI-ProteinID:
UTH29599
LinkDB
All DBs
Position
complement(3034703..3036733)
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AA seq
676 aa
AA seq
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MSTTLAPALHDRAELFALLSTWSERGWLRELDRALAQLFAEVDPDASPLLLLGAALASHQ
LGQGHVCLDLAATLANPDFTLSLPPEGEDAQEALILPSQVLAGLSLESWLAACAGSSLLE
SEGAPLVLSGACLYMRRYWNYERQVAGDIARRLQASAAAPSDLAARLVSLFPDAVVVDGQ
RQTDWQKLACAMAAQGRFTLITGGPGTGKTTTVVRLLALLQEAAMANGEPLRLSLAAPTG
KAAARLTESIGAQVQSLALDERVREQIPTLVTTLHRLLGSRPGSRHFRHDAANPLPLDVL
VVDEASMIDLEMMAGLLGALPTHARLILLGDKDQLASVEAGAVLGDLCREAESGGYSEAT
RAWLESQTGERLDDPALISGNKALAQHIVMLRHSRRFGSGSGIGRLARAVNQGDAQAARA
TLATGADDLHVLRLSGEQDRALERLLIGGLGEAEPRPQGYAHYLQMMQAQRPAPGADPQA
WDRWAGNVLAAFDQFQLLCAVRKGTWGVEALNERTAEALVRRGLLEQSQGWYEGRPVLVT
RNDYSLGLMNGDIGIALRLPEPPEFSGAPVREVLRVVFPRNDGSGALRHILPSRLSAVET
VFAMTVHKSQGSEFAHCALILPDSLNPVLTKELVYTGITRARHWFSLIESRSGIFEQAVQ
RRVQRRSGLREALEAL
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgacacttgcgccggcgctgcatgatcgcgccgaactctttgccctgctttcc
acctggagcgagcgtggctggctgcgcgagttggatcgggcgctggcgcagctgttcgcc
gaagtggacccggacgcttcgcccttgctgctgctcggcgccgcgctggccagccaccaa
ctgggccagggccacgtctgcctcgatctggcggccacgctggccaatccggatttcacc
ctgtcgctgccgccggaaggcgaggacgcgcaagaagcgctgatcctgccgtcccaggta
ctggccgggctcagcctggagtcctggctggcggcctgtgccggcagctcgctgctggag
tccgaaggtgcgccgctggtgctcagcggcgcctgtctatatatgaggcgttattggaac
tacgaacgtcaggtggcaggcgatatcgcccggcgtctgcaggcgagcgctgcggccccg
agtgatctggccgcgcgcctggtttcactctttcccgacgcggtggtggtggacggccag
cgccagaccgactggcagaagctggcctgcgccatggccgcgcaggggcgcttcaccctg
atcaccgggggacccggaaccggcaagacgacgacggtggtgcgcctgctggcgctactg
caggaagccgccatggccaatggcgagccgctgcgcctgagcctggcagcgcctaccggc
aaggcagccgcgcggctgaccgaatccatcggcgcgcaggtgcagtccctggccctggac
gagcgagtgcgtgaacagattcctaccctggtgacgacgctgcatcgtctgctgggcagt
cgtcccggcagccgccatttccgtcacgatgccgccaaccccttgccgctggatgtgctg
gtggtcgacgaagcctcgatgatcgacctggaaatgatggccggtctgctgggcgcgttg
ccgacgcatgcgcgtctgattctgctgggcgacaaggaccaactggcgtcagtggaggcc
ggcgcggtgctgggcgacctgtgccgggaggcggaaagcggtggctacagcgaggcgacg
cgtgcctggctggaaagccagacgggcgagcggctggacgatccggcgctgatatccggt
aacaaggcgctggcgcagcatatcgtcatgctgcgccactcgcgtcgtttcggcagtggc
tcgggtatcggccgtctggcgcgggcggtgaaccagggggatgcgcaggcggctcgtgcg
actctggcaaccggcgcggacgacctgcatgtgctgcgcctgtccggcgagcaggaccga
gcgctggagcgactgttgatcggcgggctgggcgaagccgagccacgtccgcaggggtat
gcgcattatctacagatgatgcaggcgcagcgtcccgccccgggtgctgacccgcaggcc
tgggatcgttgggccggtaatgtcctggcagcgttcgatcagttccagctgctctgtgcg
gttcgtaaaggtacttggggtgtcgaagcgctcaatgaacgtaccgctgaagcattggta
cggcgcggcctccttgagcagtcgcagggctggtatgaagggcggcccgtgctggtaacg
cgcaacgactacagtctggggttgatgaacggcgatatcggcatcgcgctgcgtctgccc
gaaccgccggagttttcaggtgcgcctgtacgcgaggtgctgcgcgttgtgttcccgcgc
aacgacggcagtggcgccttgcggcatatcctgcccagtcgcctgagtgcggtggagacc
gtgttcgccatgaccgtgcacaagtcgcagggctcggagttcgcccattgcgcgctgatc
ctgcctgacagcctcaatccggtgttgaccaaggagctggtctacaccggtatcacccgg
gcgcgccactggttcagcctgatcgaaagccgttccggcatcttcgagcaggcggtacag
cggcgtgtgcagcggcgtagtggtttgcgcgaggccctcgaagcgttatag
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