Ectopseudomonas hydrolytica: NLY38_15900
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Entry
NLY38_15900 CDS
T08519
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
phf
Ectopseudomonas hydrolytica
Pathway
phf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLY38_15900 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phf03019
]
NLY38_15900 (recQ)
03400 DNA repair and recombination proteins [BR:
phf03400
]
NLY38_15900 (recQ)
Enzymes [BR:
phf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NLY38_15900 (recQ)
Messenger RNA biogenesis [BR:
phf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLY38_15900 (recQ)
DNA repair and recombination proteins [BR:
phf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NLY38_15900 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Sigma70_r4_2
ResIII
HTH_23
GerE
HTH_29
Sigma70_r1_2
Transposase_mut
Motif
Other DBs
NCBI-ProteinID:
UTH29921
LinkDB
All DBs
Position
complement(3391370..3393502)
Genome browser
AA seq
710 aa
AA seq
DB search
MLDHALRILKDVFGYDAFRGNQAAIIERVAAGGDALVLMPTGGGKSLCYQVPALMREGLA
VVVSPLIALMDDQVATLEELGVAAVALNSTLSADEQREIAERIRRGQIKMLYLAPERLVQ
PRMLSFLQGLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPQVPRLALTATADKRT
REEIVQRLHLDNAERFLSSFDRPNIFYRIQPKDQPRKQLLGFLAARKGDAGIVYCLSRKK
VEEVADFLSSQGFPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
CHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLANSEGDERHKRIEQHK
LDAMLALCEETRCRRQALLAYFDEELPQPCGHCDNCIDGVETWDATEPARQALSAIYRSG
QRYGVGHLVDILLGRDNEKIRAAGHQHLAVFGIGKGFSEVEWRTLFRQLVARGLADVDLD
GFGGLRLSETCRPLLRGEVGLQLRREPKPAQAAKASSSAASQLVRGHERDMWEALRSLRR
KLAEEHSVPPYVIFPDATLLEMLRSQPGSLSEMAEVSGVGARKLERYGQAFLEVLNGSAA
DEAPAPVADLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEAISAQQLSLEQALDLP
EDLLGEIQESFLDGEGELPAVGEIAPLFAGRVDEAVLYCVRAALQAEFEL
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaccacgccctgcgcattctcaaagacgttttcggctatgacgcctttcgcggc
aaccaggccgcgatcatcgagcgcgtggccgcgggcggcgatgccctggtactgatgccc
accggtggtggcaaatcgctgtgctatcaggtcccggcgttgatgcgcgaagggctggcg
gtggtggtttcacccctgatcgcgctgatggacgatcaggtggcgacgctcgaggaactg
ggtgtggcggcggtggcgctgaattccaccctgagcgcggatgagcagcgcgagatcgcc
gagcgcattcgccgcgggcagatcaagatgctctacctggctcccgagcgcctggtgcag
ccgcgcatgctgagtttcctgcagggcctggacatcgccctgttcgccatcgacgaggcg
cactgcgtgtcgcagtgggggcacgatttccgccccgagtatctgcagctcggtcagctt
gccgagctgttcccgcaggtgccgcgccttgccctgaccgccacggcggacaagcgcacc
cgcgaggagatcgtccagcgcctgcacctggacaacgccgagcgcttcctgtcgagcttc
gaccggcccaacatcttctaccgcatccagcccaaggatcagccgcgcaagcaactgctc
ggctttctcgccgcgcgcaagggcgatgccggtatcgtctactgcctgtcgcgcaagaag
gtcgaggaggtcgccgactttctcagcagccagggcttcccggcgctgccgtatcacgcc
ggcctgcccaacgaactgcgcgcctatcaccagaagcgctttctcaacgaggaagggctg
atcatggtggcgaccatcgccttcggcatgggcatcgacaagcccaacgtgcgcttcgtc
tgccatctggatctgcccaagtcgctggaggcctactaccaggaaaccggccgcgccggg
cgtgacggtttgcccgccgatgcctggatggcgtacggcctgcaggacgtgatcttcctc
aagcagatgctggccaactccgagggcgacgagcgccacaagcgcatcgaacagcacaag
ctcgacgccatgctcgccctgtgcgaggaaacccgctgccgtcgccaggcgctgctggcc
tatttcgacgaggaactgccgcagccctgcgggcattgcgacaactgcatcgatggcgtc
gagacctgggacgccaccgagccggcgcgtcaggcgctgtcggctatctaccgcagcggc
cagcgctatggcgtcggccatctggtggacatcctgctcggtcgtgacaatgagaagatc
cgcgccgccgggcaccagcacctggccgtgttcggtattggcaagggattttccgaggtc
gagtggcgcaccctgttccgccaactggtcgctcgcggcctggccgacgtcgacctggac
ggcttcggcggcctgcgcctgagcgagacctgtcggccgctgctgcgcggcgaggtcggt
ctgcagctgcgccgcgaacccaagcccgcgcaggcggccaaggcctccagcagcgccgcc
agtcagctggtgcgcggccacgagcgggacatgtgggaagcgctgcgcagcctgcggcgc
aagctggccgaggagcacagcgtgccgccttacgtgatcttccccgatgccacgctgctg
gaaatgctgcgcagccaacccggttcgctgagcgagatggccgaggtcagcggcgtgggc
gcgcgcaagctggaacgttacggccaggccttcctggaagtgctcaacggcagcgccgcg
gacgaggcgccggctccggtggccgatctgcgtcacgaactggtcagcctggcacgcgcc
ggcatgaccccggcgcagatcgccggccagctgaactgctccgaaaagaacgtctacagc
ctgctggccgaggcgatttccgcgcagcagctgagcctggaacaggcgctggacctgccg
gaagacctgctgggcgagattcaggagagctttctcgacggcgagggcgagctgcctgcg
gtaggcgagatcgctccgctattcgccggccgcgtcgacgaagcggtgctctactgcgtg
cgcgcggcgctgcaggccgagttcgagctgtga
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