Ectopseudomonas hydrolytica: NLY38_17580
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Entry
NLY38_17580 CDS
T08519
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
phf
Ectopseudomonas hydrolytica
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phf03019
]
NLY38_17580 (hrpA)
Enzymes [BR:
phf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NLY38_17580 (hrpA)
Messenger RNA biogenesis [BR:
phf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NLY38_17580 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_25
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
NACHT
T2SSE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UTH34205
LinkDB
All DBs
Position
complement(3758864..3762901)
Genome browser
AA seq
1345 aa
AA seq
DB search
MTDLATLQKKLDHVMIAERHRLRRQLHELQKHPDEAKLAQCLERFQASSDKVAARRSSIP
AMRYDDALPIAAKRDEIKAALEKSQVVVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQ
PRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDGTLIKLMTDGILLAETQHDRFLE
KYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDLERFSKHFNDAPIIEV
SGRTYPVETWYRPLAAEVDEEGERLLDDLSIDQGILAALEEIAEHERSVGKRPGDVLVFL
PGEREIREAAEVLRKANLRHTEVLPLYARLTPAEQQKIFAPMPGRKIVLATNVAETSLTV
PGIRYVIDSGTARISRYSYRAKVQRLPIEPVSQASANQRKGRCGRVEPGICIRLYSEEDF
LGRPEFTDPEILRTNLAAVILQMLHLRLGSIEDFPFIEPPDGKAISDGFNLLQELSAVNR
ESQLTPIGRQLARLPIDPRLGRMVLEGAKQGSLEEILIVAAALSVQDPRERPMDRQQAAD
QAHAQWKDVDSDFAALINLWRGFEEKRQELGSNPLRTWCKKNFLNYMRLREWRDAHRQLV
LIARELQLQGGRGSGGGDQGAQKDRRQAGSYEAAVAPTKDTRVNAIARQQAEASEAAVRA
KNYAAVHKAILAGLLSQIGQKTEEGDYLGARQRRFWIHPSSVIGRKKPNWVMAAELVETT
KLFARMVAKIEPDWIEPLAAHLVKKNHLEPHWEKKRGQVVAYEQVTLYGMIIVGRRPVHY
GPIDPPVAREMFIREGLVRGEINSRVRCLTANRQLLERLDELEAKSRRRDILADEETLFG
YYEARIPQDIYQAASFESWYKKGSAADPQLLIMREEDALARDAKEVTAAQYPDTLRIGEL
QLPLSYHFEPNHPRDGVTLRVPAPLLPQLQPERLEWLVPGLLEAKCVALVRGLPKALRKN
FVPVPDFVGAALDKLVFGQGSLPQALGQELLRMTGARVSDEAWAEAAESIENHLKMNIEV
VDARGKFLGEGRDLAELTARFAEASQAALAIPQQSDKPKAVEAKAFAEVAEKAQQKIAGL
SMTVYPALVEEGGVVKEGRFPTQAEADFQHRRALQRLLLQQLAEQAKFLRGKLPGLTELG
LLYRDIGRIEALVEDILLASLDACILEGEATLPRDGAALAQLAERKRGGWTAHAERVARQ
VLEILKLNHGLQKRFKGKIDLAQAMALNDIKQQLANLVYAGFVRETPGEWLKEIPRYLKA
IEQRLDKVGAQVQRDRVWAGELTGYWEQYQARTAKHAQEGKRDPQLTLYRWMLEEYRVSL
FAQQLGTKMAVSDKRLAKQWSLVEA
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgactgacctcgccacgctgcagaagaaactcgaccacgtcatgatcgccgagcgccat
cgcttgcgccggcagttgcatgagctgcagaagcaccccgacgaggccaagctggcgcag
tgtctggagcgttttcaggcgtccagtgacaaggtggcggcgcggcgtagcagcatcccg
gcgatgcgctacgacgatgcgctgccgattgccgccaagcgcgacgagatcaaggccgcg
ctggagaagagccaggtggtggtgattgccggtgagacggggtcgggcaagaccacgcaa
ctgccgaagatctgtctggagatcggccggggtgtgcatgggctgatcggtcacacccag
ccgcgccgcctggcggcgcgcagtgtggcgacgcgggtggctgaagagatcggtacgccg
ctgggcgagctggtcggctatcaggtgcgtttcgaggatcagagcaaggacggcacgctg
atcaagttgatgaccgacggcatcctgctcgccgaaacccagcacgaccgctttctggaa
aagtacgacacgatcattgtcgacgaggcgcacgaacgtagcctcaatatcgattttttg
ctcggctacctgaagaccctgctgccgcgtcgcccggacctgaagctgatcatcacgtcg
gcgaccatcgatctggagcgtttctccaagcacttcaatgacgcgccgatcatcgaggtg
tccggccgcacctacccggtggaaacctggtaccgcccgctggcggccgaggtggacgag
gagggcgagcgcctgctcgatgacctgtccatcgaccagggcattcttgccgcgctggag
gagatcgccgagcacgagcgcagcgtgggcaagcgccccggcgacgtgctggtgttcctg
cccggcgagcgcgagattcgcgaggcggccgaggtgctgcgcaaggccaatctgcgccat
accgaggtgctgccgctgtatgcacggctgacgccggccgagcagcagaagatcttcgcg
cccatgccggggcgcaagatcgtgctggccaccaacgtggcggaaacctcgctgaccgtg
ccgggcatccgctatgtgatcgacagcggcaccgcgcggatcagccgctacagctaccgt
gccaaggtgcagcgcctgcccatcgagccggtgtcgcaggccagcgccaaccagcgcaag
ggccgctgcggccgggtcgagccgggcatctgcattcgtctgtacagcgaggaagatttt
ctcggtcgccctgaattcaccgacccggagattctgcgcaccaacttggcggcggtgatt
ctgcagatgctgcacctgcgcctgggcagcatcgaggacttcccctttatcgagccgcca
gacggcaaggccatcagcgacggcttcaacctgttgcaggagctgtcggcggtcaaccgc
gaaagccagctcacgcccatcggccggcaactggcgcgcctgcccatcgacccccgcctg
gggcgcatggtgctggaaggcgccaagcagggcagcctggaggagatcctcatcgtcgct
gccgcgctgtcggtgcaggacccgcgcgagcggccgatggatcgccagcaggccgccgac
caggcgcacgcgcaatggaaggatgtggactcggacttcgccgcgttgatcaacctgtgg
cgtggtttcgaggaaaaacgccaggagctgggcagcaacccgctgcgtacctggtgcaag
aagaatttcctcaactacatgcgcctgcgcgaatggcgtgatgcgcaccggcaactggtg
ctgatcgcccgtgagctgcaattgcagggtgggcgcggctcgggtgggggcgatcaaggt
gcgcagaaggatcgccggcaagccggctcctacgaggcggcggttgctccgaccaaggac
acccgcgtcaacgccatcgcccgtcagcaggccgaggccagcgaagcggcggtgcgggcg
aagaactacgccgccgtgcacaaggcgattctcgccggcctgctcagccagatcggccag
aagaccgaggagggcgactacctcggcgcccgccagcggcgcttctggattcacccgtcg
agcgtgatcgggcgcaagaaacccaactgggtgatggccgccgagctggtggaaaccacc
aagctgttcgcccgtatggtggccaagatcgagccggactggatcgaaccgctggcggcg
catctggtgaagaagaaccatctggagccgcattgggagaagaagcgcggccaggtggtg
gcgtacgagcaggtcaccctgtacggcatgatcatcgtcggtcgccgcccggtgcattac
ggccccatcgatccgccggtggcgcgcgagatgttcattcgcgaggggctggtgcgtggc
gagatcaacagccgcgtgcgctgcctgaccgccaaccgccagttgctcgaacgcctcgac
gagctggaggccaagtcgcgccgccgcgacatcctcgccgacgaggaaaccctgttcggc
tactacgaggcgcgcatcccgcaggacatctaccaggccgcgagtttcgagagttggtac
aagaaaggcagcgcggccgacccgcagctgctgatcatgcgcgaggaagacgccctggcc
cgcgatgccaaggaggtcaccgccgcgcagtacccggacaccttgcgcatcggcgagctg
caactgccgctgtcctatcacttcgagcccaaccacccgcgtgacggcgtgaccctgcgc
gtgccggcgccgctgttgccgcaactgcagcccgaacgcctggaatggctggtgccgggg
ctgctggaggccaagtgcgtggcgctggtgcgcggcctgcccaaggcgctgcgcaagaac
ttcgtgccagtgccggacttcgtcggcgcggcgctggacaagctggtgtttggccagggt
tcgttgccgcaggcactcggtcaggagctgctgcgcatgaccggcgcgcgggtgtccgac
gaggcctgggcggaagcggctgaaagcatcgaaaaccacctgaagatgaatatcgaggtg
gtggatgcgcgcggcaagttcctcggtgaaggtcgtgacctggccgagctgaccgcgcgt
ttcgccgaggccagccaggctgccttggccatcccgcagcagagcgacaagccgaaagcg
gtggaggccaaggcctttgccgaagtggcggaaaaggcccagcagaagatcgccggtctc
tccatgaccgtctacccggcgctggtggaagagggtggggtggtcaaggaggggcgcttc
ccgacccaggccgaggccgacttccagcaccgccgcgccctgcaacgcctgctcttgcag
caactggccgagcaggccaagttcctgcgcggcaagctgccggggctgaccgagctgggc
ctgctgtatcgcgatatcggccgcatcgaggcgctggtcgaggacattctgctggccagc
ctggatgcctgcatcctcgaaggcgaagcgacgctgccgcgtgatggcgcggccctggcg
caactggccgagcgcaaacgcggtggctggacggcgcatgccgagcgcgtcgcccgccag
gtgctggaaatcctcaagctcaaccatggcctacagaagcgcttcaagggcaagatcgat
ctggcccaggccatggcgcttaacgacatcaagcagcaactggccaatctggtgtatgcc
ggcttcgtgcgcgagacgccgggcgagtggctcaaggagattccgcgttacctcaaggcc
atcgagcagcgcctggacaaggtgggcgcgcaggtgcagcgcgaccgcgtctgggccggc
gagctgaccggctattgggagcagtaccaggcgcgcacggccaagcatgcccaggaaggc
aaacgcgacccgcaactgaccctgtatcgctggatgctggaggaataccgcgtgtcgctg
ttcgcccagcaactggggacgaagatggcggtatcggacaagcgcctcgccaagcagtgg
agcctggtggaggcctga
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