Pseudomonas hydrolytica: NLY38_18845
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Entry
NLY38_18845 CDS
T08519
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
phf
Pseudomonas hydrolytica
Pathway
phf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NLY38_18845 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phf03400
]
NLY38_18845 (ligD)
Enzymes [BR:
phf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NLY38_18845 (ligD)
DNA repair and recombination proteins [BR:
phf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NLY38_18845 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UTH30480
LinkDB
All DBs
Position
4011420..4013933
Genome browser
AA seq
837 aa
AA seq
DB search
MAKAQSEYSRKRNFERTSEPAERTGKRRSKAGALRFVVQKHDARRLHYDFRLELDGTLKS
WAVPKGPSLDPRDKRLAVHVEDHPLEYASFEGSIAEGNYGAGDVIVWDQGIWQPQGDPAA
AYAAGKLKFSLVGEKLSGDWTLVRTRLRGSGDKEQWLLIKERDDIARPSDEYDIVEAQPQ
SVISGALVGGPSAKAKGKTPSKAKTPKPAAAFPESLAPQLATLSDRPPEGDWLYEVKFDG
YRILARIRDGEVRLFTRNGHDWTQRLPLQAEALAKLGLHDSWLDGEVVALNEQGLPDFQQ
LQNAFDIGRSHDLVYYLFDAPFINGEDLRQTPLEQRRAQLKLLLGNTRNGPLRFSAAFTA
HHRDIVESACAMSLEGVIGKRAGSLYVSRRSADWIKLKCRLRQEFVIVGHTQPQGSRSGF
GALLLAVNEDDGLRYAGRVGTGFGEAALKALHQRLQELAREDSPLAHKLTAAQARGVSWV
EPQLVGEVEFAEWTREGIVRQASFVALRSDKPAAQIVRERPGAPQSPPPRKPAAKAGGKP
VVAGVAISNAQRVIDPDSGTSKLQLAQFYESIADWLLPYLNNRPVSLLRAPEGIGGEQFF
QKHAERLAIPNIKHLDPELDPGHARLMEIDSVAALVGAAQMGCIELHTWGATSDRIETPD
LFVLDLDPDPALPWRSMLEATRLTLTVLDELGLQAFLKTSGGKGIHIIVPLARRAGWDEV
KAFAKAIAQFMTSQLPERFTATSGPKNRVGKIFIDYLRNSRGASTVAAYSVRARPGLPVS
VPISRDELDGLRSAQQWTVGNLQQRLDGLKQDPWQGYSNRQRLTRAMWDRLGAKPPS
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggcgcagagcgaatacagccgcaaacgcaatttcgaacgcaccagcgagccg
gccgagcgcaccggcaagcggcgcagcaaggccggcgcgctgcgtttcgtggtgcagaag
cacgacgccaggcgcctgcattacgacttccgcctggagctggatggcaccctgaagagc
tgggcggtgcccaaggggccgagcctggacccgcgcgacaagcgcctggccgtgcacgtc
gaggatcacccgctggagtacgccagcttcgagggcagcattgccgagggcaactacggc
gccggcgacgtcatcgtctgggaccagggcatctggcaaccccagggcgatccggccgct
gcctatgcggcgggcaagctcaagttcagcctggtcggcgagaaactgtccggcgactgg
acgctggtacgcacccgcctgcgcggcagcggcgacaaggagcagtggctgctgatcaag
gagcgcgacgacatcgcccgccccagcgacgagtacgacatcgtcgaggcgcagccgcag
agcgtgatcagcggcgcgctggtgggggggccgagcgccaaggccaagggcaagacgccg
agcaaggccaagaccccgaaaccggccgccgcctttcccgagagcctggcgccacagctg
gcaaccctgtccgaccgcccacctgagggcgattggctgtacgaggtgaagttcgacggt
taccgcattctcgcgcgcatccgcgacggcgaggtgcgcctgttcacccgcaacggccac
gactggacgcagcgtctgccgctgcaggccgaggccctggccaagctgggcctgcacgac
agctggctggacggtgaggtggtggcgctcaacgaacagggcctgcccgactttcagcaa
ctgcagaacgccttcgatatcggtcgcagccacgacctcgtctactacctgttcgatgca
ccgttcatcaacggcgaggacctgcgccagaccccactggagcagcgacgggcacagctc
aagctgctgctgggcaacacgcgcaacggcccgctgcgcttctctgccgcattcaccgcg
caccaccgcgacatcgtggaaagcgcctgcgccatgtccctggagggggtgatcggcaag
cgcgccggcagcctctacgtgtcgcgccgcagtgccgactggatcaagctcaagtgccgc
ctgcgccaggaattcgtcatcgttggccatacccagccgcaaggcagccgcagcggtttt
ggggcattgctgctggcggtcaatgaggacgacggcctgcgctacgccggacgcgtcggt
acggggttcggcgaagcggcgctgaaggcgctgcatcagcgtctgcaagagctggcacgc
gaggattcgccgctggcgcacaagctgaccgcggcgcaggcccgcggcgtcagctgggtc
gagccgcagctggtcggcgaagtggaattcgccgaatggacgcgcgagggcatcgtgcgc
caggccagcttcgtcgccctgcgcagcgacaagccggcggcgcagatcgtccgcgagcgg
cccggtgcgccgcaatcgccgccaccgcgcaagccggctgccaaggcaggcggcaagccg
gtggtcgccggcgtggcgatcagcaatgcgcagcgggtgatcgaccccgacagtggcacc
agcaaactgcagctggcgcagttctacgaaagcatcgccgactggctgctgccgtacctg
aacaatcgcccggtatcgctgctgcgcgcaccggagggcatcggcggcgagcagttcttc
cagaagcatgccgagcgcctggccattcccaacatcaagcacctcgaccccgagctcgac
cccggccatgcccggctgatggagatcgacagcgtcgccgcgctggttggcgcggcgcag
atgggctgcatcgaactgcacacctggggcgccaccagcgaccgcatcgagacgccggac
ctgttcgtgctcgacctcgacccggaccccgcgctgccctggcgcagcatgctcgaggcc
acccgcctgaccctgacggtgctcgacgaactgggcctgcaggcctttctcaagaccagc
ggcggcaagggcatccatatcatcgtgccgctggcccgacgcgccggttgggacgaggtc
aaggccttcgccaaggccatcgcccagttcatgaccagccagctgccggagcgcttcacc
gccacctccgggccgaagaaccgggtcggcaagatcttcatcgactacctgcgcaacagc
cgcggcgccagcaccgtggccgcctattcggtccgtgcgcggccagggctgccagtgtcg
gtgccgatcagccgcgacgagctggatggcctacgcagcgcccagcaatggacggtcggc
aatctgcagcagcgtctggatgggctgaagcaggatccctggcagggctacagcaaccgc
cagcgcctgacacgcgccatgtgggacaggctcggcgccaagcccccctcgtag
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