Ectopseudomonas hydrolytica: NLY38_20285
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Entry
NLY38_20285 CDS
T08519
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
phf
Ectopseudomonas hydrolytica
Pathway
phf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLY38_20285 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phf03019
]
NLY38_20285 (rhlB)
Enzymes [BR:
phf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NLY38_20285 (rhlB)
Messenger RNA biogenesis [BR:
phf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NLY38_20285 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UTH30758
LinkDB
All DBs
Position
4318390..4319838
Genome browser
AA seq
482 aa
AA seq
DB search
MLKALKKMFGKAEDEQPQPAPSPATAPAQSRGADDKRPRKNKPARPASETASDSPAPQQP
RPPKADKPRRERPAKPVDNWKLEDFVVEPAEGKTRFHDFKLAPELMHAIHDLGFPYCTPI
QAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRE
LVVQIAKDAVALTKYTKLNVMSFVGGMDFDKQLKQLESRFCDILVATPGRLLDFNQRGEV
HLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMKGDRQTLLFSATFTEDVMNLAKQWTV
NPAIVEIEPENVASDTVEQHVYAVASSDKYKLLYNLVTQNAWDRVMVFANRKDEVRRIEE
RLTRDGVSAAQMSGDVPQHKRIKVLEGFRAGHIRVLVATDVAGRGIHVDGISHVINFTLP
EDPDDYVHRIGRTGRAGSSGTSISFAGEDDAFALPPIEALIGRKIQCEMPPDELLKPVPR
KH
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaaaatgttcggcaaagccgaagacgagcagccacaaccagcg
ccgtcacccgcaacagcgcccgcccagagccgtggcgcagacgacaagcgtccccgcaag
aacaagcccgcccgcccagccagcgagactgcgagcgacagccccgcgccacagcagcct
cgcccgcccaaggccgacaaaccgcgccgcgagcgcccggccaagccggtggacaactgg
aagctggaagacttcgtggtcgagccggccgaaggcaagacgcgcttccacgacttcaag
ctcgcccccgagctgatgcacgccatccacgacctcggcttcccctactgcacgccgatc
caggccggcgtactcggttacaccctcaagggccaggacgccatcggccgcgcccagacc
ggcaccggcaagaccgccgccttcctcatctcgatcatcacccagctgctgcagacgccg
ccgccgaaggaacgctacatgggcgagccgcgcgcgctgatcatcgcgccgacccgcgag
ctggtggtgcagatcgccaaggacgccgtcgcgctgaccaagtacaccaagctcaacgtg
atgagcttcgtcggcggcatggacttcgacaagcagctcaagcagctcgaatcgcgtttc
tgcgacatcctggtcgccaccccgggccgcctgctggacttcaaccagcgcggcgaggtg
cacctggacatggtcgaggtgatggtgctggacgaagccgaccgcatgctcgacatgggc
ttcatcccgcaggtgcgccagatcatccgccagacgccgatgaagggcgaccgccagacc
ctgctgttctccgccaccttcaccgaagacgtgatgaacctggccaagcaatggacggtc
aacccggccatcgtcgagatcgagccggagaacgtcgccagcgacaccgtcgagcagcac
gtctacgccgtggcctccagcgacaagtacaaactgctgtacaacctggtgacgcagaac
gcctgggaccgggtgatggtcttcgccaaccgcaaggacgaagtgcgccgcatcgaggag
cgcctgacccgcgacggcgtcagcgccgcgcagatgtccggcgacgtgccgcagcacaag
cgcatcaaggtgctcgaaggcttccgcgccgggcatatccgcgtgctggtggccaccgac
gtggccggccgcggtattcacgtcgacggcatcagccacgtgatcaacttcaccctgccg
gaagacccggacgactacgtgcaccgcatcggccgtaccggccgtgccggcagcagcggc
acctcgatcagcttcgccggcgaggacgacgccttcgccctgccgccgatcgaagcgctg
atcggccgcaagatccagtgcgaaatgccgccggatgagctgctcaagccggtaccgcgc
aagcactga
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