Ectopseudomonas hydrolytica: NLY38_24340
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Entry
NLY38_24340 CDS
T08519
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10943
two-component system, response regulator FlrC
Organism
phf
Ectopseudomonas hydrolytica
Pathway
phf02020
Two-component system
phf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NLY38_24340
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NLY38_24340
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
phf02022
]
NLY38_24340
02035 Bacterial motility proteins [BR:
phf02035
]
NLY38_24340
Two-component system [BR:
phf02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
NLY38_24340
Bacterial motility proteins [BR:
phf02035
]
Flagellar system
Flagellar assembly proteins
Others
NLY38_24340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
Mg_chelatase
AAA
AAA_16
AAA_22
HTH_30
HTH_1
AAA_7
AAA_19
AAA_3
HTH_24
TIP49
ATPase
Motif
Other DBs
NCBI-ProteinID:
UTH31525
LinkDB
All DBs
Position
complement(5168128..5169537)
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AA seq
469 aa
AA seq
DB search
MKHSTQTVSYACDELFDEQLGQQHIVVVGQADAASERLLTGGLQRRGFPVRRFASCLELD
PAALEGASLVLVFVSSLAGNTLYAQVGAILRQVSRVGVVPVVEYADQEKAAALLELGCVD
YLLAPFSEAQLSALLRRQESASAGEEGFVSCSQAGRRLLAMAQRVAMTRAPILITGETGT
GKELMARYIHRFSAQDDAPFIAVNCAAIPEQMLESILFGHEKGAFTGAVSAQPGKFELAN
GGTLLLDEIGELPLGLQAKLLRVLQEQRVERLGGRREIALDVRIIAATNRDLQQEVAEGR
FRADLMFRLDVLPLHISPLRERKEDVLPLARRFIRQYAPQDARHELLTEDACRALLAYDW
PGNVRELENCLQRALILRNGLYIQAQDLGLSVPVSSAPESTPRLQPQLLEGGKAALRASG
KWAEYQHVIDTIRRFGGHKTKAAESLGMTPRALRYRLNAMREQGVQIPV
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcactcaactcaaacggtaagttacgcctgcgacgagctgttcgatgaacagctg
gggcagcaacatatagtcgtggtcggtcaggccgatgccgccagcgagcgtctgctgacc
ggcggcctgcagcgtcggggctttcctgtccgtcgtttcgccagttgcctggagctggat
ccggccgcgctggaaggtgccagcctggtgctggtgttcgtcagcagcctggccggcaat
acgctgtatgcccaggtgggcgccattctgcgtcaggtcagccgcgtcggcgtggtgccg
gtggtcgaatatgccgatcaggaaaaggccgcggcgctgctcgagctgggctgcgtcgat
tatctgctggcgccgttcagcgaggcccagctcagtgcactgctgcgtcgccaggagtcg
gccagcgcaggcgaggagggcttcgtttcctgctcgcaggccggccgccgtctgctggcc
atggcccagcgcgtggccatgacccgtgccccgatccttatcaccggcgagaccggcacc
ggcaaggagctgatggcgcgctacatccaccgcttctcggcgcaggacgatgcgcccttc
attgccgtgaactgcgcggctatccctgagcagatgctcgaatccatcctgttcggccat
gagaagggcgccttcaccggtgcggtcagtgcgcagccgggcaagttcgaactggccaac
ggcggcaccctgctgctcgacgagatcggcgagttgccgctggggctgcaggccaagctg
ctgcgggtgctgcaggagcagcgcgtcgagcgcctgggcgggcgccgtgaaatcgctctg
gatgtacgcatcatcgccgccaccaaccgtgacctgcagcaggaagtggccgaaggccgt
ttccgcgccgacctgatgttccgcctcgatgtgctgccgctgcacatcagcccgctgcgc
gagcgcaaggaagacgtgctgccgctggcgcgccgcttcattcgccagtacgcgccgcag
gacgcgcgccacgaactgctgaccgaagatgcctgccgcgcgctgctggcctatgactgg
ccgggcaacgtgcgcgaactggagaactgcctgcagcgtgcgctgattctgcgcaatggc
ctgtatatccaggctcaggacctgggcctgagcgtgcccgtgagcagcgcgccggagtcg
acgccgcgccttcagccgcaactgctggagggcggcaaggcggccctgcgcgccagtggc
aagtgggccgagtaccagcacgtgatcgacaccatccgccgtttcggcgggcacaagacc
aaggccgccgaaagcctcggcatgaccccgcgcgcgctgcgctaccgcctcaatgccatg
cgcgagcagggcgtacagattcccgtctag
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