Ectopseudomonas hydrolytica: NLY38_24880
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Entry
NLY38_24880 CDS
T08519
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
phf
Ectopseudomonas hydrolytica
Pathway
phf03420
Nucleotide excision repair
phf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NLY38_24880 (uvrD)
03430 Mismatch repair
NLY38_24880 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phf03400
]
NLY38_24880 (uvrD)
Enzymes [BR:
phf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NLY38_24880 (uvrD)
DNA repair and recombination proteins [BR:
phf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NLY38_24880 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NLY38_24880 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_22
AAA_11
RHH_1
DUF3553
Motif
Other DBs
NCBI-ProteinID:
UTH31620
LinkDB
All DBs
Position
5288066..5290249
Genome browser
AA seq
727 aa
AA seq
DB search
MQNDPELLLASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAMGASPHSIL
SVTFTNKAAAEMRHRIEQMLGHNPAGMWVGTFHGLAHRLLRAHWQEAGLAENFQILDSDD
QQRLIKRVIRELGLDEQRWPAKQAQWFINGQKDEGFRPQHIQAGGDLFLATMRGIYEAYE
AACARTGVIDFSELLLRALDLWRDKPGLLEHYQRRFRHILVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGARIENIQQFSSDFPDTQLIRLEQNYRSTAGILKAANALIA
NNNGRLGKELWTDGGDGEPLALYAAFNEHDEARYVVESIEDALRKDGLKRSEIAILYRSN
AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLDGRGNDAALERIVNVPARG
IGEKTVESIREFARAQDLSMWEAIRRMLAVKALPGRAAGALGGFIELIEGLAEKVMAMPL
HQMTQVVIEQSGLLAYHEAEKGEKGQARVENLEELVSAARAFENDEDDELTPLQAFLTHA
SLEAGDTQAAENEDSIQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQKLVISYAETRRLYGSETYNKVSRFVREIPAPLIQEVRLSNSVSRPVSTSS
MSGGSLFAGSAVPQTPFNLGQRVRHSLFGEGTILNFEGAGAQARVQVNFENEGSKWLMLA
YAKLEAC
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacgaccccgaactcctcctcgcttcgctcaacgacgcccaggtccaggccgtg
gccgccccgctcggccgccagctggtgctggccggcgccggctcgggcaagacccgcgtg
ctggtgcaccgcatcgccttcctgatccaggcgatgggcgcctcgcctcactcgatcctg
tcggtgacctttaccaacaaggccgccgccgagatgcgccaccgcatcgagcagatgctc
ggccacaacccggccggcatgtgggtcggcaccttccacggccttgctcatcgcctgctg
cgcgcacactggcaggaagccgggctggccgagaacttccagattctcgactccgacgat
cagcagcgcctgatcaagcgggtgatccgcgaactgggcctggacgaacagcgctggccg
gccaagcaggcgcagtggttcatcaacgggcagaaagatgaggggttcagaccccagcac
atccaggccggcggcgacctgttcctggccaccatgcgcggcatctacgaggcctacgag
gcggcctgcgcgcgcaccggggtcatcgacttctccgagctgctgctgcgcgccctcgac
ctgtggcgcgacaagccgggcctgctcgaacattaccagcggcgtttccgccatatcctg
gtggacgagttccaagacaccaacgccgtgcagtacgcctggctgcgtctgctggccaag
ggcggcgacagcctgatggtggtgggcgacgacgaccagtcgatctacggctggcgcggc
gcgcgcatcgagaacatccagcagttctccagcgacttccccgacacccagctgatccgc
ctggagcagaactaccgctccaccgccggcatcctgaaagctgccaacgcgttgatcgcc
aacaacaacgggcgcctcggcaaggagctgtggaccgacggcggcgacggcgagccgctg
gccctgtacgccgccttcaacgagcacgacgaagcgcgctacgtggtcgagagcatcgag
gacgccctgcgcaaggacggcctcaagcgcagcgagatcgccattctgtatcgctccaac
gcccagtcgcgggtgctggaagaggcgctgctgcgcgagcgcattccctaccgcatctac
ggcggccagcgcttcttcgagcgcgccgagatcaagaacgccatggcctatctgcgcctg
ctcgacgggcgcggcaacgacgcggcgctggagcgcatcgtcaacgtgccggcacgcggc
atcggcgagaagacggtcgagagcatccgcgagttcgcccgcgcccaggacctctccatg
tgggaggcgatccgccgcatgctcgccgtcaaggcgctgcccggccgtgccgccggcgcg
ctgggcggctttatcgagctgatcgaaggcctggccgagaaggtcatggccatgcccctg
caccagatgacccaggtggtcatcgagcagagcggcctgctcgcctaccacgaggcggaa
aagggcgagaagggccaggcacgggtggagaacctggaggaattggtcagcgccgcgcgc
gccttcgagaacgacgaagacgacgagctgaccccgctgcaggccttcctcacccacgcc
tcgctggaggccggggacacccaggccgccgagaacgaggacagcattcaactgatgacc
ctgcacagcgccaagggcctggaattccccctggtgttcctggttggcatggaggagggt
ctgttcccgcacaagatgagcctggaagaaccgggccgactggaagaagaacgccgcctg
gcctatgtcggcattacccgtgccatgcagaagctggtgatcagctacgccgaaacccgg
cgtctctacggtagcgagacctacaacaaggtgtcgcgcttcgtccgcgaaatccccgca
ccgctgattcaggaagtgcgtctgagcaacagcgtcagccgtccggtgagcaccagctcg
atgagcggtggcagcctgttcgccggcagcgccgtgccgcagacgcccttcaacctgggt
cagcgggtacgccacagcctgttcggcgagggcaccattctcaacttcgagggtgccggc
gcccaggcacgggtgcaggtgaattttgaaaacgaaggcagcaagtggctgatgttggcg
tacgccaagctggaagcctgttag
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