Ectopseudomonas hydrolytica: NLY38_25870
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Entry
NLY38_25870 CDS
T08519
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
phf
Ectopseudomonas hydrolytica
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phf03032
]
NLY38_25870 (topA)
03400 DNA repair and recombination proteins [BR:
phf03400
]
NLY38_25870 (topA)
Enzymes [BR:
phf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NLY38_25870 (topA)
DNA replication proteins [BR:
phf03032
]
Prokaryotic type
DNA Topoisomerases
NLY38_25870 (topA)
DNA repair and recombination proteins [BR:
phf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NLY38_25870 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UTH34297
LinkDB
All DBs
Position
unnamed:74239..76266
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AA seq
675 aa
AA seq
DB search
MKLMIVESPNKTKKITEILAHIRPGENWKVAASVGHIRDLPATGETEGEITTGVRADLMP
RYELTDKGKDVVSRLKALAEKADEIYLATDPDREGESISWHLQQALKLKNPIRVSFNEIT
EGRIRSAIENPTRIDMKLVGAQEARRVLDRLVGYLVSPALYKLTGDRLSAGRVQSPAVYL
VVVREREIAAFKVTVHYGAQLIFADAKTGGQWAVEWMTAEGFTSDDNPYFMDGRYAGLVA
GVRDVSVLSCEEKDASRNPPGPFTTSTLQQAASNALKWNPKKTMDLAQELFAQGHISYHR
TDNPNVADESMPDIRAVAAALGLEVVDKRREFKAGEGAQAGHPGITPTHWEVEVAGETPD
QQTLYKLIRTRAIASQLLAARYKDRTVIMRATEPVEGKPVTFGAVGRTLVSPGWLKLLGK
DAAEDDDEDAEPNNPIPLLTPGQTLKALDGKVLEKKTRPPKRYTEASLVKALEVKGIGRP
STSASIMNNIIEIRGYVEVDSKRQLRPTPLGEKLIACLEGKFSFLDLGFTRELETDLDKI
AEGKAQYRGVVERLHASLGSELGQLSSMPSMRKEHPCPDCGKPMHRRKGSNGHFWGCTGY
PDCNTTLPDEKGEPGKPKVVALSNYPCGKCGKPLVHKQKKGKGGYDFWGCSGFKEGCRAS
YPNLKGNKPDMANGK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgatgattgttgaatcacccaataaaacgaaaaagattactgagatcctggcc
catatccggccgggcgaaaactggaaggtcgcggccagcgtcggccatatccgtgatctg
cccgccacgggcgaaacggaaggcgagattacaaccggcgttcgcgcggatctcatgccg
cgctatgagctgaccgacaaaggcaaagacgttgtttcgaggctcaaggccctggccgag
aaggccgacgaaatctatctggcgaccgaccctgaccgcgaaggggaaagcatcagctgg
cacctgcagcaggcgctcaagctgaaaaacccgatacgggtgagcttcaacgaaatcacc
gaggggcggattcgctcggcaatcgagaacccgacccgaatagatatgaagctggtaggc
gcccaggaagcgcgccgggtgctggatcgcctggtgggctacctggtgagcccggcgctc
tacaagctgacgggcgaccggctatcggcgggccgcgtgcaatcgccggccgtgtatctg
gtagtggtgcgagagcgcgagattgccgccttcaaggtgacagtccactacggggcacag
ctcattttcgcggacgcgaaaacgggcgggcagtgggccgtcgagtggatgacggccgag
ggcttcacttcggacgacaacccttacttcatggacggccgctatgccggcctggtggcc
ggtgtccgtgatgtttccgtgctgtcgtgcgaggaaaaggacgcttcacgcaatccgcca
ggccccttcaccacgtcaacgctgcagcaggccgcgagtaacgcgctcaagtggaacccg
aaaaagacaatggatctggcgcaagagctgttcgcgcagggccatatctcctatcaccgc
actgacaatcccaacgtggccgacgaatccatgcccgatattcgggccgtggcggctgcg
ctgggtctggaagtggtcgataagcgccgggagttcaaggccggcgagggcgcccaggcc
gggcaccccggcattacgccaacccattgggaggtcgaagtggcgggcgaaacgcccgac
cagcagaccctatataagctgatccgcacgcgggctattgcctctcagctcctggccgct
cgatacaaagaccgaaccgtcatcatgcgtgcgactgagccggtcgaaggcaagccggtg
acgtttggcgcggtcggccgcacgctggtatcgccaggctggctcaagctgctgggcaag
gatgctgcagaggacgacgatgaagacgccgagccgaacaacccgattccgctactgacg
cccggccagaccctcaaggccctggatggcaaagtgctggaaaagaagaccaggccgccg
aagcgctataccgaggccagtctggtgaaagccctggaagtgaaggggataggtcggccg
tcaacgtccgcctcgattatgaacaacatcatcgagattcgcggctatgtagaggtcgat
agcaagcggcagctgcgccccacgccgttgggcgaaaagctgattgcctgccttgagggc
aaattcagcttcctcgatctgggctttacccgcgagctggaaacggatctcgacaagatc
gcagagggcaaggcgcagtatcggggcgttgttgagcggctgcatgccagcctcgggagc
gagctgggccagctctccagcatgcccagcatgcgcaaagagcatccttgcccggattgc
ggcaagcccatgcaccgcaggaagggcagcaatggccacttctggggctgcactggctac
ccagactgcaacaccacgctgccggatgaaaagggcgagccaggcaagcccaaggtggtc
gcgctgtcgaactacccgtgcggcaagtgcggcaagccgctcgtccacaagcaaaagaag
ggcaagggcggctatgacttctggggctgcagcggcttcaaggaaggttgccgggcctcg
tatccgaacctgaaaggcaacaagcccgatatggcgaacgggaagtga
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