Polaribacter huanghezhanensis: KCTC32516_01625
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Entry
KCTC32516_01625 CDS
T09192
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
phg
Polaribacter huanghezhanensis
Pathway
phg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KCTC32516_01625 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phg03021
]
KCTC32516_01625 (rpoB)
03400 DNA repair and recombination proteins [BR:
phg03400
]
KCTC32516_01625 (rpoB)
Enzymes [BR:
phg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KCTC32516_01625 (rpoB)
Transcription machinery [BR:
phg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KCTC32516_01625 (rpoB)
DNA repair and recombination proteins [BR:
phg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KCTC32516_01625 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
AGA2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WKD86259
LinkDB
All DBs
Position
1705222..1709037
Genome browser
AA seq
1271 aa
AA seq
DB search
MTTKNTTERINFASAKLGTDYPDFLDIQVKSFQDFFQLQTKAEERGEEGLYKTFMDNFPI
TDTRNNFVLEFLDYFVDPPRYSIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIVQDV
YLGTIPYMTNSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIE
FATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKAGLKKVLGRK
LAARVLKTWHEDFVDEDTGEVVSIERNEIIFDRDTIIEKDHIDEIIESGVKTVLLHKEDH
QMGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSEQRYNLGE
VGRFRMNTKLQLDEPIDQKVLTKNDIITIIKYLIELINSKAEVDDIDHLSNRRVRTVGEQ
LAGQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFA
KVNNLGFIETPYVKVAEGNVDANKEHIYLSAEEEEGMKFAQSNVEVDAKRNIVGDRVISR
EGGDFPVVTPNEIDYMDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPES
PIVGTGLERRVAKDSRILINAEGAGVVEYVDANKITIKYDRSDEERMVSFDSDEISYNLI
KFRKTNQGTCINLKPIVKKGDRVTEGQVLCEGYATQKGELALGRNMKVAFMPWKGYNFED
AIVISEKVVREDIFTSIHIDEYSLDVRDTKLGTEELTNDIPNVSEEATKDLDENGMIRIG
AEVNPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLF
RRAVKDKTKRARDKEAIIALESSFVTKFEILKDQLVEKLFALISGKTSQGVFNDLGEEVL
PKGKKFTLKMLNSVEDYAHLTQGSWTTDKDLNKSVGELVHNYKIKVNDLQGNLRREKFTI
SVGDELPAGILKLAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRAEDMPFLEDGTPVDI
VLNPLGVPSRMNIGQIYETVLGWAGQKLGTKYATPIFDGASLDQINEITDDAGVPRFGHT
YLYDGGTGKRFDQPATVGIIYMIKLGHMIEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAYGASSILREILTVKSDDVLGRAKTYEAIVKGEEMPEPGLPESFNVLMHEL
KGLGLNVQLEE
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacgaaaaacactactgaaagaataaacttcgcgtcagcaaaattgggaactgat
tatccagattttttggatattcaagtaaaatcattccaagattttttccaattacaaaca
aaagctgaagagcgtggtgaagaaggtttgtataaaactttcatggataattttccaatt
acagatacacgtaataattttgtgttagaattcttagactactttgtagatcctccaaga
tatagcattcaagaatgtatagaaagaggtttaacacacagtgttcctcttaaagcgcgt
ttaaaattatactgtacagatccagaacacgaagatttcgaaaccatcgtacaagatgtt
tatttaggaactattccttatatgacaaactctggtacgttcgtaatcaatggagcagaa
agagttgtagtttctcaattacacagatctccaggtgtattcttcggacaatcattccac
gcaaacggaaccaagttatactctgcaagagtaattccttttaaaggatcttggatagaa
tttgcaactgatatcaatcaagtaatgtatgcttatattgatagaaagaaaaaattacca
gtaacaacattatttagagcaatcggtttcgaaagagataaagatattctagagattttt
gatttagcagaagaagtaaaagtttctaaagctggattaaaaaaagtattaggacgtaaa
ttagcggctagagttttaaaaacttggcacgaagatttcgttgatgaagatactggagaa
gtagtgtcaattgaaagaaatgaaattatctttgatagagatactattatagagaaagac
catattgatgagattatcgaatcgggtgtaaaaacagtgttattacacaaagaagatcat
caaatgggcgattatgctattattcataatacgctacaaaaagatccaacaaactcagaa
aaagaggctgttgaacatatttatagacaattacgtaatgctgagccgccagatgaggaa
acagcaagaggtattattgataaattattcttttctgaacaacgttacaatttaggtgaa
gttggtcgttttagaatgaatacaaaacttcagttagacgaaccgattgatcaaaaagta
ttgacaaaaaatgatattattaccatcattaaatacttaattgaattgatcaattctaaa
gcagaagtagatgatattgatcacttatctaaccgtcgtgttagaactgtaggtgagcaa
ttggctggtcagtttggtgttggtttagctcgtatggctcgtacaattcgtgaaagaatg
aatgtacgtgacaacgaagtatttactccaattgatttgatcaacgcaaaaacattatca
tcagtaattaactcattctttggtaccaaccagttatctcaatttatggatcaaacaaat
ccattagcagagattacacataagcgtcgtttatcggctcttggacctggaggtttatca
agagaaagagcaggatttgaggtgcgtgatgttcactatacacattacggtcgtttatgt
ccaattgaaactccagagggaccaaatattggattaatatcttctttagctgtgtttgca
aaagtaaacaacttaggatttattgaaactccatatgtaaaagttgctgaaggaaatgta
gacgctaataaagaacacatctacttaagtgcggaggaagaagaaggaatgaagtttgcg
caatctaatgtagaagttgatgcaaaaagaaatattgttggagacagagttatttcacgt
gaaggtggtgattttccagtagttactccaaatgaaattgattatatggacgttgctcca
aatcaaatcgcttctatttcagcttcattaattccatttttagagcatgatgatgcgaat
agagctttgatgggatcgaacatgatgcgtcaagcagttccattattaagaccagaatct
ccaattgttggtactggtttagagcgaagagttgcaaaagattctagaatcttaatcaat
gcagaaggagcaggagttgtagaatatgtagatgcaaataaaattacaattaagtacgat
agatctgacgaagaaagaatggtaagttttgattctgatgaaatatcttacaacttaatt
aaatttagaaaaaccaatcaaggtacttgtatcaacttaaaaccgattgtaaaaaaggga
gatagagttacagaaggacaagttctttgtgaagggtatgcaacacaaaaaggagagtta
gctttaggaagaaatatgaaagtagcctttatgccttggaaagggtataactttgaggac
gcaattgtaatttctgaaaaagtagttcgtgaagatatttttacatcaattcatattgat
gaatattctttagatgttagagatacaaaattgggaactgaagagttaacgaatgatatt
cctaatgtttctgaagaagcgacaaaagatcttgatgaaaacggaatgattcgtattgga
gcagaagtaaatcctggtgatattttaattgggaaaattacaccaaaaggagaatcagat
ccaactccagaagaaaaattattacgtgcaatttttggtgataaagccggtgatgtaaaa
gatgcatcattaaaagcttctccatcattaagaggtgtagtaattgataaaaaattattt
agaagagcagttaaagataaaacaaagagagcaagagacaaagaagcaattattgcttta
gaaagttcgtttgttactaagtttgaaattttaaaagatcaattagttgaaaaacttttt
gcgttgattagcggaaaaacttctcaaggtgtatttaatgatttaggtgaagaagtactt
ccaaaaggaaagaagtttaccttaaaaatgttaaactctgttgaagattatgcgcattta
actcaagggtcttggacaactgataaagatttaaacaaatctgtaggagaattagttcat
aattataaaattaaagtaaacgatttacaaggtaatttacgtcgtgaaaagtttacaatt
tctgtaggagatgaattaccagccggaattttaaaactagctaaagtttatgttgctaaa
aaacgtaaattaaaagtaggtgataaaatggcaggtcgtcacggaaataaaggtattgtt
gctcgtattgttagagcagaagacatgcctttcttagaagacggaactccagtagatatc
gttttaaatccattaggtgtaccatctcgtatgaacattggtcagatttatgaaactgtt
cttggttgggcaggtcaaaaattaggaactaaatatgcaacaccaatttttgatggagca
tctttagatcaaatcaacgaaattacagatgatgctggtgtacctagatttggacatacg
tatttatatgatggtggaacaggaaaacgtttcgatcaaccagcaacagttggtatcatt
tatatgattaagttaggacacatgattgaggataaaatgcacgcgcgttctattggtcct
tattcactaattacacaacaaccattaggaggtaaagctcaatttggaggtcagcgtttt
ggagagatggaagtttgggcattagaagcatatggtgcatctagtatcttaagagaaatc
ttaacagtaaaatcggatgacgtgttaggaagagctaaaacgtacgaggctattgttaaa
ggtgaagaaatgccagaacctggtttaccagaatcatttaacgtattaatgcacgaactg
aaaggtttaggattaaacgttcaattagaagaataa
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