Polaribacter huanghezhanensis: KCTC32516_01626
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Entry
KCTC32516_01626 CDS
T09192
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phg
Polaribacter huanghezhanensis
Pathway
phg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KCTC32516_01626 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phg03021
]
KCTC32516_01626 (rpoC)
03400 DNA repair and recombination proteins [BR:
phg03400
]
KCTC32516_01626 (rpoC)
Enzymes [BR:
phg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KCTC32516_01626 (rpoC)
Transcription machinery [BR:
phg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KCTC32516_01626 (rpoC)
DNA repair and recombination proteins [BR:
phg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KCTC32516_01626 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
EF-hand_5
Motif
Other DBs
NCBI-ProteinID:
WKD86260
LinkDB
All DBs
Position
1709143..1713417
Genome browser
AA seq
1424 aa
AA seq
DB search
MARKNEKYTVKKFNKISIGLSSPEAILGISRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKM
GYLLGLPSKKLDMIIYYERYVVIAPGIAKNAEGEPLQKMDFLTEEEYLDIAESIPQENQY
LDDSDPNKFIAKMGAECLIDLLARIDLDELSYELRHKANTETSKQRKTEALKRLNVVEAF
RDSNKERENKPEWMIMKAVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLSECGIPKEMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPVTVPSQDMVLGLYYMTKERISTPEV
PIKGEGLTFYSPEEVNIAFNEEMVDLNAGIKVRTYDIDENGEQVRKIIKTTVGRVLFNEV
VPAKAGYINDVLTKKSLRGIIGGILKATDIPTTGEFLDNIKNMGYKFAFQGGLSFSLGDI
IIPEEKTSMIAEANEEVDVIIANYNMGMLTNKERYNQVIDIWGSTNNRLTELSMKRLRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINEQDCGTLRGLEVMPLKKND
EIVESLAERIEGRVSLQNVYAPLTDDLLVNAGEEISSNIADAIHAAGIDRIQVRSALTCE
STKGICAKCYGQSLSTRNKVQIGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGNISEDNK
LTANFDGKISIEDLRTVKGKDASGDEIVIVISRTAEMKIIDKKTGITLSTNNIPYGSTIF
EMDRKSIKKGDVVCQWDPFNGVIVSEFGGKVCFDDLEQGINYSVEIDEQTGFQEKVITDS
KNKKIIPSLIIEDKDGNALRSYSLPVGAHLMIDNGETVESGKILVKIPRKSGKAGDITGG
LPRVTELFEARNPSNPAVVAAIDGVVSFGKIKRGNREIIVESKTGDVRKYLIKLSNQILV
QENDFIKAGMPLSDGAITPIDILNIQGPSAVQEYLVNEIQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTLFLENQLIHKNDFIEENDAIYGMKVVEDAGDSENLKAGQIITSRQL
RDENSILRRNDKNLASARDAQPATAEQVLQGITRASLQTKSFISAASFQETTKVLNEAAV
NGKIDTLEGLKENVIVGKRIPAGTGMRQYDHIIVGPKEEMEENL
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaaaacgagaagtacactgtaaaaaagtttaataaaatctcaattggatta
tcatctccagaagctattctaggaatctctagaggagaggtgttaaaaccagaaacaatt
aattaccgtacacacaaaccagaaagagatggtttattttgtgagcgtatttttggtcct
gtaaaagactttgaatgtgcttgtggtaaatataaaagaattcgctacaaaggaatcgtt
tgtgaccgatgtggtgtagaagtaacagaaaagaaagtacgtagagatagagtaggacac
attaatttggtagttcctgttgctcatatctggtactttagatcattgcctaacaaaatg
ggataccttttagggttgccatctaaaaagttagacatgattatctattacgagcgttac
gtagtaattgctccaggtattgcaaaaaatgctgaaggagaaccattacaaaaaatggac
ttcttaacagaagaagaatacttagatattgcagaatcaattccgcaagaaaatcaatat
ttagatgattctgacccaaacaagtttatcgctaaaatgggagcagaatgtttaattgat
ttgttagctcgtatcgatttagatgaactttcttatgaattaagacataaagcaaataca
gaaacgtctaaacaacgtaaaacggaagcattaaaacgtttaaatgttgttgaagcattt
agagactctaataaagaaagagaaaacaagccagaatggatgattatgaaggcagttccg
gtgattccaccagaattacgtccattagtgccattagatggtggtcgttttgcaacttca
gatttaaatgatttatacagaagagttattatcagaaacaaccgtttgaaaaggttggtt
gagatcaaagctccagaagttattttacggaatgaaaaacgtatgttacaagaatcagta
gattcattatttgacaacacacgtaaatcatcagcagtaaaaacagaatctaacagacca
ttaaaatcgttgtcagattcattaaaagggaaacaaggacgtttccgtcaaaacttactt
ggtaagcgtgttgattattctgcacgttctgtaattgttgttggaccagaattaaagtta
tcggaatgtggtatcccaaaggaaatggcagccgaattatacaagccttttgtaattaga
aagttaatagaaagaggaattgtaaaaactgtaaaatctgcaaagaaaataattgataga
aaagagcctgtagtttgggatattttagagaatgttttaaaaggacatcctgtattatta
aaccgtgctccaacgcttcaccgtttaggaatccaagcttttcaaccaaaattaattgaa
ggaaaagcaattcaattacacccattagtgtgtacggcatttaacgccgattttgatgga
gatcaaatggcagtacatttaccattaggaccagaagctattttagaagcacaattatta
atgttggcttctcacaatatcttaaatcctgcaaatggtgctccagtaacagttccttct
caggatatggtacttggattgtactatatgacaaaagaaagaatctctactccagaagtt
ccaattaaaggagaaggcttgactttttattcaccagaagaagtaaacattgcttttaac
gaagaaatggttgatttgaatgctggaattaaagtaagaacttacgatattgatgaaaat
ggagaacaagttcgaaaaattattaaaacaacagttggtagagttttattcaacgaagtt
gtaccagcaaaagctggatatattaatgacgtattaactaaaaaatctttaagaggtatt
attggtggaattttaaaagctactgatatccctaccacaggagaatttttagataatatt
aaaaacatgggatataagtttgcattccaaggaggtttatcatttagtttaggtgatatt
attattcctgaagaaaaaacatcaatgattgctgaagcgaatgaagaagtagatgttatt
attgcaaactataacatgggaatgttaacaaacaaagaacgttacaatcaggtaattgac
atttggggttctacgaacaacagattaacagagttatcgatgaaacgtttgcgtgaagat
caacaagggtttaactcagtgtacatgatgctagattctggagcgaggggttctaaagaa
caaatccgtcagttaacaggtatgcgtggattaatggcaaaacctaaaaaatctactgca
ggtggtggagaaattattgagaatccaattctttctaactttaaggaagggttatcgatt
cttgaatactttatctcaacacacggtgctcgtaaaggattagccgatacagcattaaaa
actgccgatgcaggttatttaacgcgtcgtttagtagatgtttctcaagatgtaattatc
aacgaacaagattgtggtactttaagaggtttagaagttatgccattaaagaaaaatgat
gaaatcgttgagtcattagctgaaagaattgaaggacgtgtttctttacaaaatgtatac
gctccattaacagatgatttattagtaaacgctggagaagaaatttcttcgaatatagca
gatgctatacatgcagcaggaatcgatagaattcaagttcgttctgctttaacttgtgag
tcaactaaaggaatttgtgcaaaatgttacggacagagtttatctacccgtaataaagta
caaattggagaagcagttggtgtaattgcagcgcaatctattggagaaccaggtacacag
ttaacattaagaactttccacgttggtggggttgctggaaatatttctgaggataataag
ttaacagcaaactttgatggtaaaatttcaatagaagatttacgaacagtaaaaggtaaa
gatgcaagtggggatgaaattgttattgtaatttctagaactgcagaaatgaaaattatt
gataagaaaacaggaattaccttaagtaccaataacattccttatggttctactattttc
gaaatggatagaaaatcaataaagaaaggtgatgttgtttgtcaatgggatccttttaat
ggtgttattgtttctgaatttggaggtaaagtttgttttgatgatttagaacaaggtatt
aactactctgtagaaattgatgaacaaacaggtttccaagaaaaagtaattacagattct
aagaataagaaaattattccttctttaattatagaagataaagatggtaatgctttacgt
tcttatagtttacctgttggagcacacttgatgattgacaatggagaaactgtagaatct
ggtaaaatcttagtaaaaattcctcgtaaatcaggaaaagctggagatattacaggaggt
ttacctcgtgtaacagaattattcgaagcacgtaacccttctaaccctgcagtagttgca
gcaattgatggtgttgtttctttcggaaaaattaagcgtggtaatagagaaattattgtt
gaatctaaaactggagatgttagaaaatacttaatcaagttatctaatcagattttagtt
caagaaaatgactttatcaaagcaggtatgccattatcagacggagcaattactccgata
gatatcttgaatattcaagggccatcagcagtacaagaatacttagtaaacgaaatccaa
gaagtatatcgtttgcaaggtgtgaaaattaacgacaaacactttgaggttgtagttcgt
caaatgatgcgtaaagttagaattattgattctggagatacacttttcttagaaaatcaa
ttgattcataaaaatgactttatcgaagagaatgacgcaatttacggaatgaaagttgtt
gaagatgcaggagattctgaaaatttaaaagcaggtcaaatcattacttcacgtcagtta
agagatgaaaattctattttacgtagaaatgataaaaatttagcatcagcaagagacgct
caaccagcaacagcagaacaagtgttgcaaggtattacaagagcatcactacaaactaaa
tcgtttatctctgcggcatcgttccaggaaactacgaaagtgttaaatgaagcagccgta
aatggtaagatagatactttagaaggattgaaagaaaatgtaattgttggtaagagaatt
ccagcaggaacaggtatgagacaatacgatcatatcattgtaggtccaaaagaagaaatg
gaagaaaatctataa
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