Pseudonocardia sp. HH130630-07: AFB00_01335
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Entry
AFB00_01335 CDS
T04486
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
phh
Pseudonocardia sp. HH130630-07
Pathway
phh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AFB00_01335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phh03400
]
AFB00_01335
Enzymes [BR:
phh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AFB00_01335
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AFB00_01335
DNA repair and recombination proteins [BR:
phh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AFB00_01335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
DUF6487
zf-FPG_IleRS
Zn_ribbon_TFIIB
HMBD
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
ANY09700
UniProt:
A0A1B1ZVF0
LinkDB
All DBs
Position
complement(268488..269294)
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AA seq
268 aa
AA seq
DB search
MPELPEVENARTVLAQATGRVIAEIDDRDDWVCRPHRPGDIATALEGGTLTTARRIGKTM
WCDTRTADGADGPALGVHLGMGGRIVVTDSGGERIGGGPARPDRQPRKTEWDRFTVAFAD
GGEFRLFDKRRLGRIRLDPDLSGLGPDAENMKPAEFRDRLAAGRSAVKARLLDQSVLAGV
GNLLADETLWQARIDPRTPVRDLTRTDLDRLHRNLDRALERAIANGGVHTGEVIEHRHPG
GHCPRCGTEMVHGTVGGRSTWWCPKEQE
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacttcccgaggtggagaacgcacggacggtgctggcacaggccaccggacgt
gtcatcgccgagatcgacgaccgcgacgactgggtgtgccggccgcaccgtcccggcgac
atcgccaccgcgctcgagggcgggacgctcaccacggcgcgccggatcggcaagacgatg
tggtgcgacacccggaccgccgacggggccgacggcccagcgctcggcgtgcacctgggc
atgggcgggcggatcgtcgtcacggactccgggggcgagcggatcggcggtggcccggcc
cgcccggaccggcagccgcgcaagaccgagtgggaccggttcaccgtcgccttcgccgac
ggcggcgagttccggctgttcgacaagcgccggctgggccggatccggctcgacccggat
ctctcggggctcggcccggacgccgagaacatgaagccggccgagttccgggaccggctg
gcggccggccgctcggcggtgaaggcgcggttgctggaccagtcggtgctcgccggcgtc
gggaacctgctggccgacgagaccctgtggcaggcccggatcgatccgcggaccccggtc
cgcgacctgacccggaccgatctcgaccggctgcaccgcaacctggaccgggccctggag
cgcgcgatcgcgaacggcggggtgcacaccggcgaggtgatcgagcaccgtcaccccggt
gggcactgcccgcgctgcgggaccgagatggtgcacgggaccgtcggcggccggtcgacg
tggtggtgcccgaaggaacaggagtga
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