Pseudonocardia sp. HH130630-07: AFB00_03075
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Entry
AFB00_03075 CDS
T04486
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
phh
Pseudonocardia sp. HH130630-07
Pathway
phh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFB00_03075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phh03019
]
AFB00_03075
03400 DNA repair and recombination proteins [BR:
phh03400
]
AFB00_03075
Enzymes [BR:
phh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFB00_03075
Messenger RNA biogenesis [BR:
phh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFB00_03075
DNA repair and recombination proteins [BR:
phh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AFB00_03075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
AAA_30
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ANY05456
UniProt:
A0A1B1ZI85
LinkDB
All DBs
Position
631862..634000
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AA seq
712 aa
AA seq
DB search
MGTVTTASETDLPGSAELRERAEAVLAQLAGDGARLREDQWTAIEALVAQHRRALVVQRT
GWGKSAVYFVATALLREQGAGPTVIVSPLLALMRNQIDAAIRSGIVAVTVNSANADEWDA
VYADIENGDVDVLLVSPERLNNPDFRDRVLPRLAASAGMLVVDEAHCVSDWGHDFRPDYR
RLRTLIAELPSGIPVLATTATANDRVVTDVSEQLGMGRDQQDTLVLRGSLDRESLRLAVV
QLPTPARRLAWLAAKLDELPGAGIVYTLTVQAADEVAGFLTERGFAVRSYSGKTAPEDRL
TAESDLQENRVKALVATSALGMGFDKPDLGFVVHLGAPASPVAYYQQIGRAGRALERAEV
VLLPGREDRDIWAYFASLAFPPEPLVRQTLGVLSGHPRSTASIETQVDLSRTRLEMLLKV
LDADGAAKRVKGGWVSTGAEWIYDTERHERVNEARRAEQQAMLDYIATSECRLVFLRRQL
DDPDPTPCGRCDTCTGTVWSALSDEAGAEGERAAQERLSRPGIEIAPRKMWPSGMADLGV
PLSGRIAAGEQAASGRAIGRLSDIGWGTRLRELLTGGDDPVPADVLDALVRVLAGWEWAQ
RPVGVVGIGSRTRPHQLDHLARRIAEIGRLPLLGTLPPAGDRPGARENSAQRLAAVWSGL
DTAALPDLSGAGGPVLLVDDLVDSGWTMTVAARALRAAGAPEVLPLTLAVAG
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgggtaccgtgacgaccgcatcggagaccgacctgccgggtagtgccgagctgcgcgag
cgcgccgaggcggtgctcgcccagctcgccggcgacggcgcccggctgcgcgaggaccag
tggaccgcgatcgaggcgctggtcgcgcagcaccgtcgcgcgctggtcgtgcagcgcacc
ggctggggcaagtcggcggtctacttcgtggccaccgcgctgctgcgcgagcagggcgcc
gggcccacggtgatcgtctccccgctgctcgcgctgatgcgcaaccagatcgacgccgcg
atccgctccgggatcgtcgcggtcacggtcaactccgcgaacgccgacgagtgggacgcg
gtgtacgccgacatcgagaacggcgacgtcgacgtgctgctcgtgtccccggagcggctc
aacaaccccgacttccgggaccgggtgctgccgcggctcgccgcgagcgccgggatgctg
gtggtcgacgaggcgcactgcgtgtcggactgggggcacgacttccggcccgactaccgg
cggctgcgcacgctgatcgccgagctgccgtccggtatcccggtgctggcgacgaccgcg
accgcgaacgaccgggtcgtcaccgacgtctcggagcagctcggcatgggccgggaccag
caggacacgctggtgctgcgcggctcgctggaccgggagtcgctgcggctggccgtggtg
cagctgccgaccccggcccggcgcctggcctggctggccgcgaagctcgacgagctgccc
ggggccgggatcgtctacacgctcaccgtgcaggccgccgacgaggtggccgggttcctc
accgagcgcggcttcgccgtgcgctcctactccggcaagaccgcacccgaggaccggctg
acggccgagtccgacctgcaggagaaccgggtcaaggccctggtcgccacgtccgcgctc
ggcatgggcttcgacaagcccgacctgggcttcgtggtgcacctcggggcgcccgcgtca
ccggtggcgtactaccagcagatcggccgcgcgggccgcgcgctggagcgggccgaggtg
gtgctgctgccgggccgggaggaccgcgacatctgggcgtacttcgcctcgctggcgttc
ccgcccgagccgctggtccgccagacgctcggggtgctgtccgggcacccgcgctcgacg
gcgtcgatcgagacccaggtcgacctgtcccggacccggctggagatgctgctcaaggtg
ctcgacgccgacggcgcggcgaagcgggtcaagggcggctgggtcagcaccggggccgag
tggatctacgacaccgagcggcacgagcgggtgaacgaggcccgccgggcggagcagcag
gcgatgctcgactacatcgcgacctccgagtgccggctggtcttcctgcgccgccagctc
gacgacccggacccgacaccgtgcggccggtgcgacacctgcaccggcaccgtgtggtcc
gcgctgtccgacgaggccggcgccgagggagagcgggccgcccaggagcggctgtcccgc
ccggggatcgagatcgcgccgcgcaagatgtggccgtccgggatggcggacctcggggtc
ccgctctccggccggatcgccgccggtgagcaggccgcgtccgggcgggcgatcgggcgg
ctgtccgacatcggctggggcacgcggttgcgtgagctcctgaccggcggcgacgatccg
gtccccgccgacgtgctggacgcgctggtccgggtgctggccggctgggagtgggcgcag
cgcccggtgggcgtggtcgggatcggctcgcgtacccgcccgcaccagctcgaccacctg
gcccgccggatcgccgagatcggccggctgccgctgctcggcaccctcccgccggccggc
gaccgtcccggggcccgggagaactcggcccagcggctcgccgccgtgtggtcggggctg
gacaccgcggcgctgcccgacctgtccggtgcgggcgggccggtgctgctcgtcgacgat
ctcgtcgacagcggctggacgatgacggtcgcggcgcgggcgctgcgggccgccggggcg
ccggaggtgttgccgctcacgctggccgtcgcgggctga
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