Pseudonocardia sp. HH130630-07: AFB00_06925
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Entry
AFB00_06925 CDS
T04486
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phh
Pseudonocardia sp. HH130630-07
Pathway
phh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFB00_06925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phh03400
]
AFB00_06925
Enzymes [BR:
phh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFB00_06925
DNA repair and recombination proteins [BR:
phh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AFB00_06925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
DUF1269
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ANY09862
UniProt:
A0A1B1ZVW3
LinkDB
All DBs
Position
complement(1445549..1449166)
Genome browser
AA seq
1205 aa
AA seq
DB search
MSGLLTSALSDAGLRAAVDAARSADTRTTEIPAVAVEGPAALRPLLTAGLAGDGCVLAVT
ATDREAEDLAAAVSDLLGHGTALDAAADTVHDSAGAPVVVLPSWETLPHEKLSPRPDTVA
RRLTIFHRLADAATAPRVVVTAARSLIQPVAPGLGALAPVTLAPGEEHDFEALLVRLVEL
AYTRAEMVTTRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSELRAFSVADQRSVGDVAR
VVVPACRELLLTTPVRERAAALAAEQPENSGLNRNPLRELLEKLSEGIPGEGMESLIPAL
VAGEMQVLPDLLPAGARVLLADPERIRTRCADLVRTGQEFLEASWLATGAGGEAPIDVSG
SAYRDLTVTLETATASGRPVVSLSPLLSGSDAAIVPAVHEIEPYRGDTDRAITDLRAHVA
TGGAALLVLAGHGTADRSIEQLREAEVPATKVDQLTDVPEKGLVTVACGRLLNGFTAPEV
GLVLLSEADLTGSRAGLDAAPRKTTPRRRNAVDLAVLQPGDHVVHNQHGIGRFVEMKERT
VQGATREYLVLEYASPKRGQPADRLFVPTDALDEISRYVGGETPAVNKLGGGDWAKTKGR
ARKAVKDIAAGLVQLYAARQASPGHAFGADTPWQRELEDAFPYTETPDQLSAIDEVKKDM
ERPVPMDRVISGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLATQHLNTFAERMRAF
PVTVRGLSRFTDPAEAKETIGKLAEGTVDVVVGTHRLLQGGVRWKDLGLVVVDEEQRFGV
EHKEHITALRAHVDVLTLSATPIPRTLEMSLAGIREMSAITTPPEDRHPTLTYVGAYDDK
QVAAAVRRELLRDGQVFYVHNRVSSIDRAAKNIQDLVPEARIAVAHGQMNEELLERTVNA
FWHREFDVLVCTTIVENGLDISNANTLIVERSDTLGLSQLHQLRGRVGRGRERGYAYFLF
PPEHPLTETAHDRLATIAQHSELGSGAAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYI
RLVGEAVAAFRTQAGGGGSGEPEELVEVRVDLPVDAHVPHDYIDGERLRLEVYRKIAESP
DDAALSAIVEELTDRYGEPPTPVRNLLEVARFRQMCRRLGVREVASAGTQLRIGPVQLPD
SAQLRLRRLYPKAQYKAAAQVLTVPKPVQGGRIGGQPVRDVELLGWCAELLVQIVPTSVP
VHSSG
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
ctgtccggtctgctcacctcagccctgtccgacgccggcctgcgggccgccgtcgacgcg
gcccgctccgccgacacccgcaccaccgagatcccggcggtcgccgtcgagggcccggcc
gcgctgcgcccgctgctcaccgccgggctcgccggggacgggtgcgtgctcgcggtcacg
gccaccgaccgggaggccgaggacctcgccgccgcggtctcggacctgctcgggcacggc
acggcgctggacgcggcggcggacaccgtgcacgacagcgcgggcgctccggtcgtcgtc
ctgccgtcgtgggagacgctgccgcacgagaagctctcgccgcgcccggacacggtcgcc
cgccggctgacgatcttccaccggctggccgacgccgcgaccgcaccgcgggtggtcgtc
accgccgcccggtcgctgatccagccggtcgcccccgggctcggcgcgctcgccccggtc
accctggcccccggcgaggagcacgacttcgaggcgctgctcgtgcgcctggtcgagctg
gcctacacccgggccgagatggtcaccacccgcggcgagttcgccgtgcgcggcggcatc
ctcgacgtcttcccgccgacggccgaacacccggtgcgggtcgagttctggggcgacgag
gtctccgagctgcgcgccttctccgtggccgaccagcgctcggtcggtgacgtggcgcgg
gtcgtcgtgccggcctgccgggagctgctgctcaccacgccggtgcgggagcgcgccgcg
gcgctggccgccgagcagccggagaactccgggctgaaccgcaacccgctgcgcgagctg
ctggagaagctgtccgagggcatccccggcgaggggatggagtcgctgatcccggcgctc
gtggccggtgagatgcaggtgctcccggacctgctccccgcgggcgcgcgggtgctgctc
gccgacccggagcggatccgcacccggtgcgccgacctggtccggaccgggcaggagttc
ctggaggcgtcctggctggccaccggtgccggcggcgaggccccgatcgacgtgtccggg
tcggcctaccgggacctgaccgtcacgctggagaccgccaccgcgtccgggcgaccggtg
gtctcgctgtcgccgctgctgtcgggctccgacgccgcgatcgtccccgccgtgcacgag
atcgagccctaccgcggggacaccgaccgggcgatcaccgacctgcgcgcgcacgtcgcc
accgggggagccgcgctgctcgtgctcgccggccacggcaccgcggaccgctcgatcgag
cagctgcgcgaggccgaggtcccggcgacgaaggtcgaccagttgaccgacgtcccggag
aagggcctggtcacggtggcctgcgggcgcctgctgaacgggttcaccgcccccgaggtg
ggcctggtcctgctgtcggaggccgacctcaccggcagccgtgccgggctggacgcggcg
ccgcgcaagaccaccccgcgccggcgcaacgccgtcgatctcgcggtgctgcagcccggc
gaccacgtcgtccacaaccagcacggcatcgggcgcttcgtggagatgaaggagcgcacc
gtccagggcgcgacccgcgagtacctggtgctggagtacgccagccccaagcgcgggcag
ccggccgaccggctgttcgtcccgaccgacgcgctcgacgagatcagccgctacgtcggt
ggcgagaccccggccgtcaacaagctcggtggcggggactgggcgaagaccaagggccgg
gcccgcaaggcggtcaaggacatcgccgccgggctggtccagctctacgccgcccggcag
gcgtcaccggggcacgcgttcggcgccgacaccccgtggcagcgcgagctggaggacgcc
ttcccctacaccgagacgcccgaccagctctcggcgatcgacgaggtcaagaaggacatg
gagcggccggtcccgatggaccgggtgatctccggcgacgtcggcttcggcaagaccgag
atcgccgtgcgggccgcgttcaaggccgtccaggacggcaagcaggtcgccgtgctcgtg
ccgacgacgctgctggcgacccagcacctcaacaccttcgccgagcggatgcgggcgttc
ccggtcaccgtccgcgggctctcccggttcaccgacccggccgaggccaaggagacgatc
ggaaagctggccgagggcaccgtcgacgtcgtggtcggcacgcaccggctgctgcagggc
ggggtgcgctggaaggacctcggcctggtcgtcgtcgacgaggagcagcgcttcggcgtc
gagcacaaggagcacatcacggcgctgcgggcgcacgtcgacgtgctgaccctgtccgcg
acgccgatcccgcggaccctggagatgagcctggccggcatccgggagatgtcggcgatc
acgaccccgccggaggaccggcacccgaccctgacctacgtcggcgcctacgacgacaag
caggtcgccgccgccgtccggcgcgagctgctgcgcgacggccaggtgttctacgtgcac
aaccgggtctcctcgatcgaccgggcggcgaagaacatccaggacctcgtgcccgaggcc
cggatcgccgtcgcacacggccagatgaacgaggagctgctggagcgcaccgtcaacgcg
ttctggcaccgcgagttcgacgtgctcgtgtgcaccacgatcgtcgagaacggcctggac
atctccaacgccaacacactgatcgtggaacggtccgacaccctcgggctgtcccagctg
caccagctgcgcggccgggtcggccggggccgggagcgcggctacgcctacttcctgttc
ccgccggagcacccgctcaccgagaccgcgcacgaccggctcgccaccatcgcccagcac
tccgagctcggctcgggtgccgccgtcgcgatgaaggacctggagatccgcggtgcgggc
aacatcctcggggccgagcagtcggggcacatcgccggcgtcgggttcgacctctacatc
cggctggtcggcgaggcggtcgcggcgttccgcacgcaggccggcggcgggggctccggc
gagcccgaggagctggtggaggtgcgggtcgatctgccggtcgacgcgcacgtgccgcac
gactacatcgacggcgagcggctgcgcctcgaggtctaccgcaagatcgccgagtccccg
gacgacgcggcgctctcggcgatcgtcgaggagctgaccgaccgctacggcgagccgccc
accccggtgcgcaacctgctggaggtcgcccggttccggcagatgtgccggcgtctcggc
gtgcgtgaggtcgcctcggcggggacccagctgcggatcggcccggtgcagctgcccgac
tcggcgcagctgcggctgcggcggctctacccgaaggcccagtacaaggcggcggcgcag
gtgctgaccgtgccgaagccggtgcagggcgggcggatcggcgggcagccggtgcgcgac
gtcgagctgctcggctggtgcgcggaactgctggtgcagatcgtgccgacgtcggtcccg
gtgcacagctcgggctga
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