Pseudonocardia sp. HH130630-07: AFB00_15080
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Entry
AFB00_15080 CDS
T04486
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phh
Pseudonocardia sp. HH130630-07
Pathway
phh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFB00_15080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phh03021
]
AFB00_15080
03400 DNA repair and recombination proteins [BR:
phh03400
]
AFB00_15080
Enzymes [BR:
phh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFB00_15080
Transcription machinery [BR:
phh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFB00_15080
DNA repair and recombination proteins [BR:
phh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFB00_15080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ANY07394
UniProt:
A0A1B1ZNT1
LinkDB
All DBs
Position
3100191..3104102
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATAEGIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNTELRHNDMSTLENEMSVERRRIEQTRDADLEARAQKLESD
IAELEAEGAKGDVRRKVKDGGEREMRQLRDRAQRELDRLEEIWTTFTKLDVQQLIADESI
YRELYDRYGDYFTGAMGAEAIQKLLENFDIPAEAEKLREIIRSGKGQKKLRALKRLKVVA
AFQTTGNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
SQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQSEARVLMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLREEAQGAGN
HYGSSAEAIMAYDRKVLHLQAPIKIRLPDVTPTPGAASETVNDEGVWTAETTLGRVLFNE
LLPADYPFVNEPLPKKRQATIVNDLAERYSMTEVAQVLDRLKDAGFFWATRSGVTISIAD
VLVPPSKAGILENYEAKADQVNKRYQRGALSHQERNDEMVKIWSQATEEVAKAMEENFPE
DNPIPTIVQSGAAGNMTQIRQLAGMKGLVANPKGEFIPRPIKASYREGLTVLEYFISTHG
TRKGLADTALRTADSGYLTRRLVDVSQDVIVRDVDCGTERAISMPVTEETSDGRLIPHRY
LRTSVYARSSAEEVTAADGSVIVGRGDDLGDQALDALVDAGVKQIRVRSALTCASATGIC
GTCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFKQGGVAGDDITTGLPRVTEL
FEARVPRGKAPIADVDGRIRIEDGDRFWKITLIPDDGSEEIAYEKLSKRQWLGMTTVDGV
ERPLADGDHVTVGQLLLEGTADPHEVLRVMGPREVQLHLVREVQKVYRTQSVDIHDKHIE
VIVRQMLRRVTIIDSGATEFLPGALAERGEFESENRRVVAEGNEPASGRPVLMGITKASL
ATESWLSAASFQETTRILTDAAINGKRDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARAAAYALPSYDDGYYSPDVFGTGTGAAVPLDDYDFGRDYR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgaactgcgcatcggcctggccaccgccgaaggcatc
cgccagtggtcgcacggtgaggtcaagaagccggagaccatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaaggggatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggcgtcccgagccggttgggctacctgctcgacctg
gctcccaaggacctcgagaagatcatctacttcgcggcctacgtgatcacctcggtgaac
accgagctgcggcacaacgacatgtccacgctcgagaacgagatgagcgtggagcgccgg
cggatcgagcagacccgtgacgcggacctcgaggcccgcgcccagaagctcgagtccgac
atcgccgagctcgaggccgagggggccaagggcgacgtccgccgcaaggtcaaggacggc
ggcgagcgggagatgcgccagctccgtgaccgggcccagcgcgagctggaccggctcgag
gagatctggacgacgttcaccaagctcgacgtccagcagctcatcgcggacgagtcgatc
taccgcgagctctacgaccgctacggcgactacttcaccggtgccatgggtgccgaggcg
atccagaagctgctggagaacttcgacatcccggccgaggccgagaagctgcgcgagatc
atccggtccggcaagggccagaagaagctgcgtgcgctcaagcgcctgaaggtcgtcgcg
gcgttccagaccaccggcaactcgccgatgggcatggtgctcgactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgcgacctcggacctg
aacgacctgtaccgccgggtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccgtcgcgggcgtccggtgaccgggccgggcaaccggccgctcaag
tcgctgtcggacctgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtcggccaagcggatggtcgagcgcggccgc
tcgcaggtgtgggacgtgctggaggaggtcatctccgagcaccccgtgctgctgaaccgg
gcgcccacgctgcaccgtctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcagtccgaggcccgcgtgctgatgctg
tcctcgaacaacatcctgtccccggcgtcgggccggccgctggccatgccgcgtctggac
atggtgacgggtctgttccacctgacccggctgcgcgaggaggcccagggcgccggtaac
cactacggctcctcggccgaggcgatcatggcctacgaccgcaaggtgctccacctgcag
gcgccgatcaagatccggctccccgacgtcaccccgacgccgggtgccgcgtccgagacg
gtgaacgacgagggcgtctggacggccgagacgacgctcgggcgggtgctgttcaacgag
ctgctcccggcggactacccattcgtcaacgagccgctgccgaagaagcgccaggccacg
atcgtcaacgacctggccgagcggtactcgatgaccgaggtcgcgcaggtgctggaccgg
ctcaaggacgccggcttcttctgggccacccggtccggcgtcaccatctcgatcgccgac
gtcctcgtgccgccgagcaaggcgggcatcctcgagaactacgaggcgaaggccgaccag
gtcaacaagcgctaccagcgtggtgccctgtcgcaccaggagcgcaacgacgagatggtg
aagatctggagccaggcgaccgaggaggtcgccaaggcgatggaggagaacttccccgag
gacaacccgatcccgacgatcgtgcagtccggggccgcgggcaacatgacccagatccgg
cagctcgccggcatgaagggtctggtcgcgaaccccaagggtgagttcatcccgcgtccg
atcaaggccagctaccgcgagggcctgacggtgctggagtacttcatctccacgcacggc
acccggaagggtctggcggacaccgcgctgcggaccgcggactcgggttacctgacccgt
cgtctggtcgacgtctcgcaggacgtcatcgtccgtgacgtcgactgcgggaccgagcgg
gcgatctccatgccggtcaccgaggagaccagcgacgggcggctcatcccgcaccgttac
ctgcgtacctcggtgtacgcccggtcctccgccgaggaggtcaccgcggccgacggcagc
gtgatcgtcgggcggggcgacgacctcggggaccaggcgctggacgcgctggtcgacgcc
ggcgtcaagcagatccgggtccggtccgcgctgacctgcgcgtcggccaccggcatctgt
ggcacctgctacggccgctcgatggccaccggtcagctggtggacgtcggcgaggccgtc
ggcatcgtcgccgcccagtccatcggtgagccgggtacccagctgacgatgcggacgttc
aagcagggtggcgtcgccggcgacgacatcacgaccggtctgccgcgtgtcaccgagctc
ttcgaggcccgggtcccgcgcggtaaggcgccgatcgccgacgtcgacgggcgcatccgg
atcgaggacggcgaccgcttctggaagatcacgctgatcccggacgacggcagcgaggag
atcgcctacgagaagctgtccaagcggcagtggctcgggatgaccaccgtcgacggcgtc
gagcgtccgctggcggacggcgaccacgtgacggtcggtcagctcctcctggagggcacg
gcggacccgcacgaggtgctgcgtgtcatgggcccgcgcgaggtgcagctgcacctggtg
cgtgaggtgcagaaggtgtaccgcacgcagagcgtggacatccacgacaagcacatcgag
gtcatcgtccggcagatgctgcgccgggtgacgatcatcgactccggcgcgaccgagttc
ctgcccggtgcactggccgagcggggcgagttcgagtcggagaaccgccgggtcgtcgcc
gaggggaacgagccggcctcgggccgtccggtcctcatggggatcaccaaggcctcgctg
gcgacggagtcgtggctgtccgcggcctcgttccaggagaccacccggatcctcaccgat
gccgcgatcaacggaaagcgcgacaagctcgtcgggctcaaggagaacgtgatcatcggt
aagctgatcccggcgggtaccggcatcaaccggtaccggaacatccaggtccagccgacc
gaggaggcccgcgcggccgcctacgccctgccgagctacgacgacggctactacagcccc
gacgtgttcggcacgggtaccggtgccgcggtgccgctggacgactacgacttcgggcgc
gactaccggtag
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