Pseudonocardia sp. HH130630-07: AFB00_15300
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Entry
AFB00_15300 CDS
T04486
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
phh
Pseudonocardia sp. HH130630-07
Pathway
phh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFB00_15300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phh03021
]
AFB00_15300
03400 DNA repair and recombination proteins [BR:
phh03400
]
AFB00_15300
Enzymes [BR:
phh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFB00_15300
Transcription machinery [BR:
phh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFB00_15300
DNA repair and recombination proteins [BR:
phh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFB00_15300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
ANY07434
LinkDB
All DBs
Position
3134037..3135089
Genome browser
AA seq
350 aa
AA seq
DB search
MLISQRPSLSEDVVAETRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
HEFTTVPGVKEDVTDIILNLKELVVSSEEDEPVTMYLRKQGPGAVTAGDIVPPAGVTVHN
PDLHIASLNDKGRLEVELVVERGRGYVPAMQNKATGAEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDKLVLDVESKPSITPRDALASAGKTLVELFGLARELNVDAEGIEIGPSPQE
ADTIAAFAMPIEELDLTVRSYNCLKREGIHTVGELVGRSEADLLDIRNFGAKSIDEVKMK
LVGLGLALKDSPPGFDPSAAASDYGVDGDSGFDPGTFGDDGQDYAETEQL
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgctgatctctcagcgaccctctctctccgaggacgtcgtcgccgagacccggtcgcgg
ttcgtcatcgagccgctggagccgggcttcggctacaccctcggcaactccctgcgccgg
acgctgctctcgtccatccccggcgccgccgtcacgtccatccggatcgacggcgtcctg
cacgagttcaccaccgtgccgggggtgaaggaggatgtcaccgacatcatcctgaacctc
aaggagctcgtcgtgagctccgaggaggacgagccggtcaccatgtacctgcgcaagcag
ggcccgggtgcggtcaccgccggcgacatcgtgccgccggccggcgtcaccgtgcacaac
ccggacctgcacatcgcctcgctgaacgacaagggccggctcgaggtcgagctcgtcgtc
gagcggggtcgtgggtacgtcccggccatgcagaacaaggccaccggtgccgagatcggc
cgcatcccggtcgactcgatctactcgccggtgctgaaggtgacctacaaggtcgaggcc
acgcgagtcgagcagcgcaccgacttcgacaagctggtgctcgacgtcgagtcgaagccg
tccatcaccccgcgggacgcgctggcctcggccggcaagaccctggtcgagctgttcggc
ctggcccgcgagctgaacgtcgacgccgagggcatcgagatcggcccctccccgcaggag
gcggacaccatcgcggcgttcgcgatgccgatcgaggagctggacctcaccgtccggtcc
tacaactgcctcaagcgcgagggcatccacacggtcggcgagctcgtcggccgcagcgag
gcggacctgctcgacatccgcaacttcggcgccaagtcgatcgacgaggtcaagatgaag
ctcgtcggtctcggcctggccctcaaggacagcccgcccgggttcgacccgtcggcggcg
gcgagcgactacggcgtcgacggtgacagcgggttcgaccccggcaccttcggtgacgac
ggtcaggactacgcagaaacggagcagttgtag
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