Pseudonocardia sp. HH130630-07: AFB00_19735
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Entry
AFB00_19735 CDS
T04486
Name
(GenBank) hypothetical protein
KO
K06236
collagen type I alpha
Organism
phh
Pseudonocardia sp. HH130630-07
Pathway
phh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
AFB00_19735
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
phh00536
]
AFB00_19735
Glycosaminoglycan binding proteins [BR:
phh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
AFB00_19735
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YNCE
Cytochrom_D1
Vgb_lyase
Mala_s_1-like
Beta-prop_EML_2
Motif
Other DBs
NCBI-ProteinID:
ANY08145
UniProt:
A0A1B1ZR13
LinkDB
All DBs
Position
complement(4166233..4169697)
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AA seq
1154 aa
AA seq
DB search
MTSAPGQPGRDDAAEPAPDGLGEAIRTGRVPVVPGSLVDLVMQSGSGSGPATAADPATER
DPGDRTPAPEPPAAEPPAAAPRRPAPRTGRVTPGPGPEPGRTGFTDLVTRGGPGARPAPA
AEEAPEESGTPAATGEPATSGFGPGDGSYADLGDLGDDPLGVGPLPDEDPLHMPADRFAP
PPSFAPDPSDPPAPAASVRAGDPDGPQPVADQPPATPAGGRPRMGGVRTGTDGVPVTAPA
PTVVPPISPTPRPLDEATAATPAVPATDTAAPATATQPASATRSKQWPPRSSRPAPDGPE
TDILPPGALIGHYPSAPSESSRPADPAPGPATGPRPTMPGRRSGPSGADRSVADRTGTDR
TDRPAAEDAVSPGPAMTAMSGNDLFATQGGEIAGGGFGRLPGRDSDEPVRGVARTPQDDA
TPAETTREERYPSLDGPRPGPGSAPAPNGRTSSAPHTGALPVHGDGPAGRTGSRADRNGG
RTAPDRDAPGSGPHAAPDADDHGTGRFVARDTRTGTFAATDGRTTTGPQTGTFAARDGRT
ATGPQTGAFPAPDGRTGSRTGAFPAGDGRTGAVPPRDGRGAAGQHTGALPAYDAGTGPES
RTAAVPARDGRTGSTPLPGADVPADRRADPGTDRPSRGPADHRADGGPEGTQHAPAPRQA
PRRAAPGGAASAAGSTETMPALDADGRPRSPQQPGPGPTVGRDRTAETAALRPTGEHPVP
GAAAGRAGGPDQADADAAVPQAAAAASLGAVSVAAKRAATGKDGTVSETGPQPVTPESKP
ISPRREAIMSAAPRNGRRGVSPAGLAIGLAILLLGGLTLWAMLSPTPQNGGAEPAPAAVG
AAEPGLGPRAAALPVGASDPRPQVRGTIPAGAAPVAVAATPGGSALVAVQDANRLLVLDP
AGDAVTGEIPLPAAPQTVTTSPDGARAFVGMAGPEGGQIAVVDVPGGTVLNTVPVAADPA
GAVPSADGRFLYVPSRADGAVAEVDPYAGVVTRSAPVSGTPDAIVADDAADRLFLAVGGS
NELTVLDPNSLTVLGTFPIGGEAGAVATTRASAPEPLVAVGGPESDTVTVLNPVDGREIS
RFDAAGGPTGLAFAGDGRHLYVVSDQGLQVVDTGTWRETGTADVAVDPTAVTVSADGRTG
WITGNGEVSVLDLA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcggcacccggtcagccggggcgcgacgacgcagcggaaccggctccggacggc
ctcggcgaggcgatccggaccggccgtgtccccgtggtccccgggtcgctggtcgacctg
gtgatgcagtcggggtccggttccggtccggccacggcggcggaccccgccacggaacgg
gacccgggcgaccggacccccgctcccgagcccccggccgcggagccgcccgccgccgcg
ccgcgccggcccgcaccgcgcaccgggcgggtcacccccggtcccggtccggagccgggt
cgtaccgggttcaccgatctcgtgacccgtggcggccccggtgcacgtccggcgcccgcg
gccgaggaggcgccggaggagtccggcacccccgccgccaccggcgagccggcgacgagc
ggcttcggccccggcgacgggtcctacgccgacctcggtgacctgggcgacgacccgctc
ggggtcgggccgctaccggacgaggatccgctgcacatgcccgcggaccggttcgccccg
ccgccgtcgttcgcgccggatccgtcggatcccccggctccggcggcgtccgtgcgtgca
ggcgaccccgacggaccgcagccggtggccgatcagccgccggccaccccggccggtggg
cgcccgcggatgggcggagttcgcaccggcaccgacggcgtcccggtgacggcaccggcg
ccgaccgtggtgccgccgatctccccgacgccccggccgctcgacgaggcgaccgccgcg
acgcccgcggtgcccgcgaccgacaccgccgcgccggccacggcgacgcagccggcctcg
gcgacccggtccaagcagtggccgccgcgcagcagccgtcccgccccggacggcccggag
accgacatcctcccgccgggtgcgctcatcgggcactacccgagcgccccgtccgagtcg
tcccggccggccgacccggcacccggcccggccaccgggccgcggccgacgatgccgggc
cgccggtccggcccgtccggtgcggaccgctccgtagccgaccgcaccgggaccgaccgc
accgaccgcccggccgccgaggacgccgtgtccccgggaccggcgatgaccgcgatgtcc
gggaacgacctgttcgcgacccagggcggggagatcgccggcggtggtttcggccggctg
cccggccgggactccgacgagcccgtccgcggcgtggcacggaccccgcaggacgacgcc
accccggccgagaccacgcgggaggagcgctacccgtccctcgacgggccccggcccgga
cccggctcggccccggcaccgaacggccgcacctcctccgcaccgcacaccggtgcgctg
ccggtccacggtgacggccccgcagggcgcaccggatcccgggcggaccgcaacgggggc
cggaccgcccccgaccgtgacgcgccggggtccggcccgcacgccgccccggacgccgac
gaccacggcaccggcaggttcgtggcccgggacacccgcaccggcacgttcgccgcgacc
gacgggcgcaccaccaccggaccgcagaccggcacgttcgcggcgcgcgacggccgcacc
gcaaccgggccgcagacgggtgcgttcccggcgcccgacggccgcaccgggtcacggacc
ggtgcgttcccggccggtgacggccggacgggcgcggtccctcctcgcgacggacggggc
gcggccgggcagcacaccggtgccctcccggcgtacgacgccggcaccggcccggagtcg
cggaccgcggccgtcccggcccgcgacgggcggaccggatccacaccgctcccgggcgcg
gacgtcccggccgaccggcgcgccgacccggggaccgaccgcccgtcgcgcggaccggcc
gaccaccgggccgacggcggtccggagggcacgcagcacgccccggcgccccggcaggcg
ccgcgccgcgccgcgcccggcggtgcggcctccgcggccggatcgaccgagacgatgccg
gccctcgacgccgacggccgtccccgctcgccgcagcaaccgggcccggggccgacggtc
ggccgggaccggaccgccgagaccgcggcgctccgcccgaccggggagcacccggtaccc
ggcgcggcagccggtcgggccggcgggccggaccaggccgacgccgatgctgcggtcccc
caggccgcggccgcggcgtcgctgggcgcggtctcggtcgcggcgaagcgtgccgccact
ggcaaggacggcacggtctccgagaccggcccccagccggtgaccccggagtcgaagccg
atctccccgcgacgcgaggcgatcatgtccgcggcgccccgcaacggcaggcgcggggtg
tccccggccggtctggcgatcggtctggcgatcctgctgctcggcggcctgacgctgtgg
gcgatgctgtcgcccaccccgcagaacggcggtgcggagcccgcacccgccgcggtcggt
gccgcggagcccggtctcggaccgcgcgcggcggcgctgcccgtcggcgcgagtgacccc
cggccccaggtccgggggacgatcccggccggtgccgccccggtcgccgtcgcggcgacc
cccggcggctcggcgctggtggcggtgcaggacgcgaaccggctgctggtcctcgacccg
gccggtgacgccgtcaccggcgagatcccgctcccggccgccccgcagacggtgaccacg
tcgccggacggcgcccgcgcgttcgtcggcatggccgggcccgagggcgggcagatcgcc
gtggtcgacgtgcccggcgggaccgtgctgaacaccgtgccggtcgccgccgaccccgcc
ggcgccgtgccgtcggccgacggccggttcctctacgtgccttcgcgcgccgacggcgcc
gtggcggaggtcgatccctacgcgggcgtcgtgacccggtcggcaccggtctccggcacc
ccggacgcgatcgtcgcggacgacgccgcggaccggctgttcctcgccgtcggcgggtcg
aacgagctgaccgtgctggatccgaacagcctcaccgtgctgggcaccttcccgatcggc
ggcgaggcgggggcggtcgcgacgacgcgggcgtccgcacccgagccgctggtcgcggtc
ggcggcccggagtcggacaccgtcaccgtgctgaacccggtcgacggccgcgagatcagc
cggttcgacgccgcgggcggccccaccgggctggcgttcgccggcgacggccggcacctc
tacgtcgtgtccgaccaggggctgcaggtagtcgacaccggcacctggcgggagaccggg
acggccgacgtcgccgtcgacccgaccgccgtcaccgtgtccgccgacggccgcaccggc
tggatcaccggcaacggcgaggtcagcgtcctcgacctcgcctga
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