Pseudonocardia sp. HH130630-07: AFB00_22660
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Entry
AFB00_22660 CDS
T04486
Name
(GenBank) hypothetical protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
phh
Pseudonocardia sp. HH130630-07
Pathway
phh03030
DNA replication
phh03430
Mismatch repair
phh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AFB00_22660
03430 Mismatch repair
AFB00_22660
03440 Homologous recombination
AFB00_22660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phh03032
]
AFB00_22660
03400 DNA repair and recombination proteins [BR:
phh03400
]
AFB00_22660
Enzymes [BR:
phh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AFB00_22660
DNA replication proteins [BR:
phh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AFB00_22660
DNA repair and recombination proteins [BR:
phh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AFB00_22660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
UVR
Motif
Other DBs
NCBI-ProteinID:
ANY08599
LinkDB
All DBs
Position
complement(4762991..4764736)
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AA seq
581 aa
AA seq
DB search
MTSCSPQLTLDELGTPLRDVTFCVVDLETTGGSHRADVITEVGLVSVRGGVPVGELSTLV
DAGVRIPADVTRLTGISTAMLAGAPPLGAVLPTVLDRLRGAVLVAHNAPFDTGFLRAACG
RHERPWPAPPVLCTARLARAVLSRSECPSVRLGALAAHFGCRTTPDHRALTDARATVEVL
HHLLERIGNLGVQSLEELLQLVKDRSPHRPTTAQRRRRHLADAVPSVPGVYLFRGGNDEV
LYVGTSGDLRRRVRSYFTAGERRRRVRDMVALAERVDTVECAHALEASVRELRLIAAHRP
RYNRRSRNPGRAWWVVPTAEAFPRLSVVSTPREGALGPFGSRRAATDVLDAALDAVPLRR
CTIRIPARNPSGTPCALHELGRCAAPCAGLQPAEEYAPAVETWHALVRGHSDAPLQELAA
GVEERSADGRYEAAARARDRLAALASGVDRAGTLAGLAALEEVVGARPDGRGGWELAVLR
HGRLAAAGCAPRGTRPMPVVESLRAGAQTVLPEPGPLRGAPAEEVRLLYRWLTEGGTRLV
YSTPSWAEPAHGAGPWRAWSERAHEAGHRTGEHAPDEARPA
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcctgctccccgcagctcaccctggacgagctgggtactcccctgcgtgatgtg
acgttctgcgtcgtcgacctggagaccaccggtgggagccaccgggccgacgtgatcacc
gaggtcggtctcgtctcggtacggggcggtgtgccggtcggcgagctgtccaccctggtc
gatgcgggagtccgcatccccgccgacgtgacccggctgaccggcatctccaccgccatg
ctggccggtgccccgccactcggtgcggtgctgccgaccgtcctcgaccggctccggggt
gccgtgctggtcgcacacaacgccccgttcgacaccgggttcctgcgggccgcctgcggg
cgccacgagcgtccgtggccggcgccaccggtgctctgcaccgcacggctcgcccgcgcc
gtgctgtcccggtccgagtgcccgagcgtccggctcggcgcgctggcggcccacttcggg
tgccgcacgacacccgaccaccgcgcgctgaccgacgcccgcgccaccgtcgaggtgctg
caccacctgctggagcggatcggcaacctcggcgtgcagagtctggaggaactgctccag
ctcgtgaaggaccgctcgccgcaccgccccaccacggcgcagcgccgccgcaggcacctc
gccgacgcggtgccgtcggtgcccggcgtctacctgttccgcggcgggaacgacgaggtg
ctctacgtgggcaccagcggtgacctgcgccgccgggtccgttcctacttcaccgccggg
gagcggcgccgccgggtccgggacatggtggcgctggccgagcgggtcgacaccgtcgag
tgcgcgcacgccctggaggcctcggtgcgggagctgcgcctgatcgcggcgcaccggccg
cgctacaaccggcgctcccgcaaccccgggcgcgcctggtgggtggtgccgaccgccgag
gcgttcccccggctgtcggtcgtgtccaccccgcgcgagggcgcactcggcccgttcgga
tcccggcgcgccgccaccgacgtgctcgacgccgcgctggacgcggtgccgctgcggcgg
tgcacgatccggatcccggcccggaacccgtccggcaccccgtgcgcactgcacgagctg
gggcggtgcgccgcaccgtgcgccggtctgcagcccgccgaggagtacgcgcctgcggtg
gagacctggcacgcgctcgtccggggccacagcgacgcgccgctgcaggaactggccgcc
ggtgtcgaggagcggtccgccgacgggcggtacgaggcggccgcccgggcccgggaccgg
ctcgccgccctcgcctcgggggtggaccgggccgggacactcgccgggctcgccgcgctg
gaggaggtcgtcggcgcccggccggacggccgcggcggctgggagctcgcggtgctgcgg
cacgggcggctggccgcggccgggtgcgcgccgcgcgggacccgccccatgcccgtcgtc
gagtccctgcgggccggggcccagaccgtcctgcccgagcccggcccgctgcgcggcgcc
ccggccgaggaggtccggctgctgtaccgctggctgaccgagggcggcacccggctggtg
tacagcacgccgtcctgggccgagccggcccacggggccgggccctggcgggcctggtcg
gagcgggcccacgaggcgggtcaccggaccggcgagcacgcaccggacgaggcccggccg
gcctga
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