Pseudonocardia sp. HH130630-07: AFB00_29040
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Entry
AFB00_29040 CDS
T04486
Name
(GenBank) heavy metal transporter
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phh
Pseudonocardia sp. HH130630-07
Pathway
phh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFB00_29040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phh03019
]
AFB00_29040
03009 Ribosome biogenesis [BR:
phh03009
]
AFB00_29040
Enzymes [BR:
phh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFB00_29040
Messenger RNA biogenesis [BR:
phh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFB00_29040
Ribosome biogenesis [BR:
phh03009
]
Prokaryotic type
rRNA helicases
AFB00_29040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Cas3-like_C_2
MurB_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ANY10504
UniProt:
A0A1B1ZXL7
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All DBs
Position
complement(6136120..6137898)
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AA seq
592 aa
AA seq
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MHALENEIDTPEPRVDDATPSFADLGLAPQLLAALAELGYETPSPIQAAAIGPLIAGRDL
LGQAATGTGKTAAFSLPMLQRLADGRGTRERGSRPFGLVLAPTRELAMQVGEAVTRYGAT
LGATVACVYGGAPIGPQLGQLRRGVDVVVATPGRAIDLINRGALALDAIEVAVLDEADEM
LDMGFVEDIETILGATPADRQTVLFSATMPGRIQSLARTHLTDPADIRIKREATPEGEAP
KVRQTAYHVPRSHVTVALGRVLEMEQPTAAIVFCRTRADVDAVTETLTARSLRAEALHGG
MDQEHRTRVVERLRSGRTELLVATDVAARGLDIDTLTHVVNHDVPSSPESYVHRIGRVGR
AGREGVAITLVTPGSVRHLRNIERLVGAPVPSAPVPTPDDLRSVRLARTALALRDQAGQD
ADTAVEDGVDELVLELARDHDLASVAAAAIRLARSDNSVPDDEIEIPQVRPRGGRERGGP
SDRGPRRDRDGGGPRGARGQGSRPPKAGTTRLFVSAGRSSGIRPQDIVGALANESRLSGR
DIGAIQIHERHALVEVPEHAAEDVLRSLRGATTLKGRKANVRRDRDAAADSR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
ctgcacgctctcgagaacgagatcgacacccccgaaccccgcgtggacgacgccaccccg
tcgttcgccgacctcggcctggccccgcagctgctcgccgcgctggccgagctgggctac
gagaccccgagcccgatccaggccgccgcgatcggcccgctgatcgccggccgcgacctg
ctcgggcaggccgccaccggtaccggcaagaccgccgcgttctcgctgccgatgctgcag
cgcctggccgacggccgcggcacccgcgagcgcggctcccggcccttcggcctcgtgctg
gcgccgacccgcgagctggccatgcaggtcggcgaggcggtcacccgctacggcgccacc
ctcggcgccaccgtcgcctgcgtctacggcggtgccccgatcggcccgcagctcggtcag
ctgcgccgcggcgtcgacgtcgtcgtcgccaccccgggccgggcgatcgacctcatcaac
cgtggtgcgctcgcgctcgacgcgatcgaggtcgccgtcctggacgaggccgacgagatg
ctcgacatgggcttcgtcgaggacatcgagaccatcctcggcgccacccccgcggaccgg
cagaccgtgctgttctccgcgaccatgcccggccggatccagagcctggcgcgcacccac
ctgaccgatccggccgacatccggatcaagcgcgaggccacgcccgagggggaggccccg
aaggtccgccagaccgcgtaccacgtgccgcgcagccacgtcacggtcgcgctgggccgg
gtgctcgagatggagcagccgaccgcggcgatcgtcttctgccggacccgcgccgacgtc
gacgccgtgaccgagaccctcaccgcgcgcagcctgcgcgccgaggcgctgcacggcggc
atggaccaggagcaccggacccgcgtcgtcgagcggctgcgctccgggcgcacggagctc
ctcgtcgcgaccgacgtcgcggcccgtgggctcgacatcgacacgctgacccacgtggtc
aaccacgacgtgccgtcctcgccggagtcctacgtgcaccgcatcggccgggtcggccgg
gccggtcgtgagggcgtcgcgatcaccctggtcaccccgggttcggtgcggcacctgcgc
aacatcgagcggctggtcggcgccccggtgccgagtgccccggtccccacccccgacgac
ctgcgcagcgtgcggctggcccgcaccgcgctggcactgcgggaccaggccgggcaggac
gccgacaccgccgtcgaggacggtgtcgacgagctggtgctggagctggcccgcgaccac
gacctcgcctcggtcgccgctgcggcgatccggctggcccggtccgacaactcggtgccc
gacgacgagatcgagatcccgcaggtccgcccgcgcggtggccgggagcgcggcggtccg
tccgaccgcggcccgcgccgtgaccgcgacggcggtggcccgcgcggcgcccgcggccag
ggctcgcgcccgccgaaggccggcaccacccggctgttcgtctcggccggccggtcctcc
ggcatccgcccgcaggacatcgtgggtgcgctggcgaacgagtcgcggctgtccggccgg
gacatcggggcgatccagatccacgagcggcacgcgctggtcgaggtccccgagcacgcc
gcggaggacgtcctgcgctcgctgcgcggcgcgaccacgctgaagggccgcaaggcgaac
gtccgccgcgaccgggacgccgccgccgactcccgctga
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