Pseudopodoces humilis (Tibetan ground-tit): 102099712
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Entry
102099712 CDS
T02921
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102099712 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
phi00536
]
102099712 (COL5A1)
Glycosaminoglycan binding proteins [BR:
phi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102099712 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102099712
NCBI-ProteinID:
XP_005529268
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
MDTHTRWKRRSWIRSCSVPAALVLLGALSLGRAAEPADLLKVLDFHNLPDGITKTTGFCT
SRRSSKEADVAYRVTKDAQLSAPTKQLYPASPFPEDFSILTTVKAKKGGQSFLISIYNEQ
GIQQIGVELGRSPVFLYEDHTGKPGPEDYPLFRGINLADGKWHRVALSVQKKNVTLVLDC
KKKITKFLDRSEHPIIDVNGIIVFGTRILDEEVFEGDIQQLLIVGDPRAALEYCEHYSPD
CDTAIPDSPQSQDPNQDEYYTDGEGEGDTYYYEYPYYEDVDEAVKPETPTTKPGPPEVAA
GERPETKQDYPAPTAAPERGNPGKQPKEDGAVDDPLVDEYNYETINEEYFTPMPYEDLNY
NEEIDPQGGLTENAVEAELPTSTVVTYNETDAAQGGDDLDKDFTEETIKEYDGNYYDSYY
DRTASPDIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLVEGPPGPEGPAGLPGP
PGPTGPVGLMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFSGGGDAGSKGPMVSAQ
EAQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEAGEMGPQGPRGIQGPPGP
AGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGNRGEPGPHGPPGAPGEDGE
RGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVAGMDGQTGPKGNVGPQGEPGPPGQ
QGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGSQGPPGP
QGPIGYPGPRGVKGADGVRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGP
EGPKGRSGPNGDPGPLGPAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGTRGT
PGKPGPRGQRGPTGPRGERGPRGSTGKPGPKGNSGGDGPPGPPGERGPPGPQGPTGFPGP
KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGP
PGEQGLPGLTGKEGTKGDPGPAGLPGKDGPPGLRGFPGERGLPGPIGSPGLKGNEGPPGP
PGPAGSPGERGPAGSAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGL
PGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPAGADGEPGP
RGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGP
PGADGPQGPPGGIGNPGAVGEKGEPGESGEPGLPGEVGLPGPKGERGEKGEAGPSGAAGP
PGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGE
PGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGI
PGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGD
RGLPGPQGSAGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGESGLPGP
PGPPGPPGEVIQPLPIQAAKRTRRNIDASQLLDDGNADNYMDYADGMEEIFGSLNSLKLE
IEQMKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETCI
FPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDSDGNPIGVVQMTFLRLLSASARQN
ITYNCYQSVAWHDATTNSYDKAIRFLGSNDEEMSYDNNPYIRAALDGCAARKGYQKTILE
INTPKVEQVPIVDIMFNDFGEAAQKFGFEVGPACFLG
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcacacgcgctggaaaaggcgcagttggatacggagctgctcggtgcccgct
gcgctggtgctgttgggtgccctgtccctcggccgggcagctgaacctgcagacctcttg
aaggtgttagattttcataatttacctgatggtatcacaaaaaccacggggttttgcaca
agcagaaggtcttcaaaagaagcagatgttgcttacagagtaacaaaagatgctcagctc
agtgccccgacaaagcagctgtatcctgcttcccccttcccagaggacttctccattcta
accactgtaaaagcgaagaaaggaggtcagtccttcttgatctcaatttacaatgagcaa
gggatccagcaaattggtgtggagttgggtagatctcctgtattcctgtatgaagaccat
acaggaaagccaggcccagaagactatcctctctttagaggcattaacctagcagatggc
aagtggcaccgagtggctctgagtgtgcagaagaaaaatgtcaccttggttctggactgt
aaaaagaaaatcaccaagttcctggaccggagcgagcatcccatcatcgacgtcaacggc
atcatcgtgttcggcaccaggatattggatgaggaggtctttgagggtgacatccagcag
ctcctgatcgtgggagacccgcgggcagccctggagtactgtgagcactacagccccgac
tgtgacaccgccatccccgactccccccagtcccaggaccccaaccaggatgaatactac
acagatggggagggagaaggtgacacttactactacgagtacccctactatgaggatgtg
gatgaagctgtcaaaccagaaacccccaccaccaaaccaggccctcctgaagtggctgct
ggagagagacccgaaaccaagcaggattacccagctcccacggcagcccctgaaagaggg
aaccccgggaagcagcccaaggaggacggagcagtggatgatcccctggttgatgagtac
aactacgagaccatcaacgaggagtattttaccccaatgccctacgaggatctcaactac
aatgaggaaattgatccccagggtggcctcactgaaaatgcagtggaagctgaactcccc
accagcactgtcgtcacctacaatgagactgatgctgctcaaggaggggatgacctggat
aaagatttcactgaggaaaccataaaggaatatgatgggaattattatgacagctattat
gaccggacagcctctcccgacatcggccccggcatgccggccaaccaggacaccatctac
gaagggatcggtggccctcggggtgagaaggggcagaagggggaacctgccattattgag
ccgggaatgctggtggaaggcccccctggtcccgaaggcccagcaggccttccaggacct
ccaggaccaactggacccgtgggcttaatgggagacccaggggagaggggccctcctggg
cgcccaggtctcccaggagcagatggattgccaggaccaccagggacgatgcttatgttg
cctttccgcttcagcggaggaggcgacgctggctccaaaggacccatggtgtcagcccag
gaggcacaagcccaggccatcctgcagcaggccaggctggcactgaggggaccagcgggg
cccatgggcctgacggggcggccgggaccgatgggacccccgggcagtggagggctgaag
ggagaagctggagaaatgggacctcagggtccacgaggcatccaaggtcctcccggtcct
gcaggaaagccaggccgcaggggacgagctggcagtgacggtgcccggggaatgccaggc
cagacaggaccaaagggtgaccgaggctttgatggcttggctggtttgcctggtgagaag
ggaaacaggggtgagccaggcccccacggccccccaggggctcctggagaggatggggag
aggggagatgatggagaagttggacccagaggtctccctggagaacctggaccccgagga
ctgctgggccccaagggacccccaggacccccaggcccaccgggtgtggctggcatggat
ggacaaacaggtcccaaagggaatgtgggtccccagggcgagccagggcccccaggacag
caggggaacccaggggctcagggtcttccaggtccacaaggtgccatcggtcccccagga
gagaaaggcccgctgggcaaacctggtctccctggcatgcctggtgctgatgggcctccg
ggtcatcctggcaaggagggtcctcctggggagaaagggagtcagggtcccccaggtccc
cagggccccattggttatccaggaccacgtggagtcaagggagcagatggagttcgtggg
ttgaaaggcaccaagggggaaaagggtgaagatggtttccctggcttcaaaggtgacatg
ggcatcaaaggagatcggggggaaattggcccccccggccctcggggtgaggatgggccc
gaaggtcccaaaggtcgctccggccccaatggagatccaggtcctcttgggcctgctgga
gagaagggaaaactcggcgtgccaggactgcctgggtacccgggcaggcagggcccgaag
ggctccatcggcttcccaggatttccaggagccaacggagagaagggcacacggggcact
cctggcaaaccaggtccgaggggacagcgtggtccgacgggtccacgtggggaaagaggc
cccaggggaagcactggaaaacctggcccaaagggcaactctggtggtgatggcccccct
ggtcctcctggagaaaggggaccaccagggcctcagggaccaactggatttcctggacca
aaaggcccccctggtcctcctgggaaggatggattgcctgggcaccctggacagagagga
gaaactggtttccaaggcaagactggccctccaggcccccctggtgttgtaggacctcag
ggtccgactggtgagactggacccatgggtgagcggggccatccaggccctccaggcccc
ccgggtgaacaaggccttcctggcctcactggaaaagaagggaccaagggggatcctggt
cctgctggcctcccagggaaggatggtcccccaggattgagaggattccctggagaacga
ggcctccccggccccattggttctccagggctgaaaggcaacgaaggtcccccaggccct
ccaggcccagccggctctccaggggagcgtggccctgcaggatcagctggccccatagga
ttgccagggagacctggccctcagggacctccaggacctgcaggtgaaaaaggagctcca
ggggagaagggtccccaaggaccggctggccgggatggcatccagggccccgtgggactg
ccgggcccagcaggtcctgttggaccacctggagaggatggagacaagggtgagatcggg
gagcctgggcagaagggcagcaaaggtgacaagggtgagcagggtcccccaggccccacc
ggtcctcagggtccaattggtcagcctggcccagctggagctgatggagagcccgggccc
cgaggacagcaaggcctctttgggcagaaaggtgacgaaggaccccgaggtttccccggt
ccccccggccccgtgggcttgcagggcctgcctggaccacctggggagaagggagaaacg
ggtgacgttgggcagatgggtccaccaggcccaccaggacccagaggtccatctgggcca
ccaggagcagatggtccacagggtcctcctggaggaataggaaatcctggtgcagtagga
gagaagggtgaacctggggaatctggtgagcctggtctccctggagaggttggcctgccg
ggtcctaaaggtgaaagaggtgaaaagggggaagcaggtccctctggtgctgctggtcca
cctggccccaaaggccctccaggtgatgatggccccaaaggcagccctggtccagttggt
ttccctggtgaccctggtcctcctggagagcctggcccagctggtcaagatggtcccccc
ggtgacaaaggtgatgatggtgaacctggacagactggctcccctgggcccacaggagag
ccaggcccctccggaccccctggaaaaaggggccctcctggtccagctggtcctgaagga
aggcaaggagagaaaggagccaagggggaagctggtttggaaggacctcctgggaagact
gggcccattggtccccaaggtgctccagggaagcctggccccgatggccttcgtgggatt
cctggtccagttggtgaacaaggtctcccaggatcccctggcccagatggtcctccaggc
ccaatgggccctccgggcttgcctggtctgaaaggagactctggtcctaaaggggagaag
ggtcacccaggtttaattggtcttattggacctccaggagagcagggagaaaagggtgac
agaggtctcccaggcccccagggctcagcaggacccaaaggagagcagggtatcacaggt
ccttctggacccatcggacctccagggcccccaggattaccgggtccacctggtcccaaa
ggtgctaaaggctcatcaggtcccacaggtccaaagggtgaatcaggtcttcctgggccc
ccagggcctcccggtcctcctggagaagtcatccagcccctgcccatccaggctgccaag
aggaccaggaggaacattgatgccagccagctgctggacgacggcaacgccgacaactac
atggactatgccgacggcatggaggagatcttcggctccctgaattccttgaaactggaa
atcgagcagatgaagcatcccttgggcacccagcacaacccagcacgcacctgcaaggac
ctgcagctctgccaccctgatttcccagatggtgaatactgggttgatcccaaccaaggg
tgctccagggactctttcaaagtttactgtaatttcacagctggtggagagacctgcatc
ttccctgacaagaaatctgaaggagctagaattacttcctggcccaaggaaaacccaggc
tcgtggttcagtgaattcaagcgcggtaaactgctctcctacgtggactctgacgggaac
cccatcggggtggtgcagatgaccttcctgcgtctcctgagcgcctctgcccgccagaac
atcacctacaactgctaccagtcggtggcctggcacgatgccaccaccaacagctatgac
aaggccatccgcttcctgggctccaacgacgaggagatgtcctacgacaacaacccctac
atccgggctgccctcgacggctgcgcggcaaggaagggctaccagaaaaccatcctggaa
atcaacacgcccaaagtggagcaggtccccatagtcgacatcatgttcaatgacttcgga
gaagcggcacagaaatttggattcgaggtgggaccagcttgcttcctgggctaa
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integrated database retrieval system
