Pseudopodoces humilis (Tibetan ground-tit): 102099780
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Entry
102099780 CDS
T02921
Symbol
PAN2
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102099780 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102099780 (PAN2)
Enzymes [BR:
phi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102099780 (PAN2)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102099780 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
102099780 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
102099780
NCBI-ProteinID:
XP_005532017
LinkDB
All DBs
Position
Unknown
AA seq
1194 aa
AA seq
DB search
MNFEGLNPSLAEFAPPLHPALEPVLDPHLNPNLVELDPEGVSLEGLPVPESVHLMEGMYS
ELHTAVSEVGVPVSVSHFDLHEEMLWVGNHGGHATSFFGPTLERYSSFQVNSSDDIRQIQ
SLENGVLFLTKTNLKYLSRGGLIIFDYLMDESEDMHSLLLTDNNTLLVAGLQNHVLEIDL
GTVQETQKYTVEVPGITIMRQSNRFFFCGHTSGKVSLRDLRTFAVEHEFDAHSGSLSDFD
VHGNLLVTCGFSSRMNGLACDRFLKVYDLRMMRATTPLQVHIDPFFLRFIPTYTSRLAII
SQTGQCQFCEPTGLANPADIFHVNTVGPLIMTFDVSASKQALAFGDSEGCVHLWADSPEV
TFNAYSRETDFALPCMVDTLPHLDWNQDLVPLSLIPVPLTSDALLSDWPAANSAPAPRRA
PPVDPEILRTMKKVGFIGYAPNPRTKLRNQIPYRLKEMDNEFDTFSQVPESPIGREEEPH
LYRVAKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRC
LVQNHLCQKEFCLGCELGLLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSDEA
TGKVNLGRLIQSWNRFILTQLHQETQEQEGPQAYRGAGSSSFGSSGDSVIGQLFSCEMEN
CSMCRCGKETVRVSSTLLFTLSYPDSTEKPAKDYEFAQILKRSICLEQNTQAWCENCEKY
QPTVQTRNIRCLPDVLVINCEVNSSKEADFWKTQAEYSFQKAMMKRGGFDITKGKEITLG
EWKDLGNPDTGHSYASVEELKNIWIPHAIKMRLTKSKELDVSNWSESDELSPMDDPESVY
IYDLMATVVHILDSRTGGSLVGHIKVGETYHQRKEGVTHQQWYLFNDFLIEPVDKCEAVQ
FDMSWKVPAILYYARRNLNAKYNLVIKNPIEASVLLAEASLARKQRKCHATFIPLMLNEM
PQAGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGVPFIDDY
ISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVKFVGHGLQKDF
RVINLMVPKDQVIDTVYLFHIPRKRMISLRFLAWYFLDLKIQGETHDSIEDARTALQLYR
KYLELSPQGSEPEEFRKVLKGLYEKGRKLDWKVPEPDSQSSPKHGAVFPPVLAL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgaagggctcaacccctctctggccgagttcgcgccgccgcttcaccccgcg
ctggagccggtgctggacccgcacctgaaccccaacctggtggagctggaccccgagggg
gtgtccctggaggggctcccggtgccggagtcggtgcacctgatggaggggatgtacagc
gagctgcacaccgccgtctccgaggtcggcgtgcccgtctccgtctcccacttcgacctg
cacgaggagatgctgtgggttggcaaccacgggggccacgccacctccttcttcgggccg
acgctggagcgctactcgtccttccaggtgaacagcagcgacgacatccgccagatccag
agcctggagaacggcgtcctcttcctcaccaaaaccaacctcaagtacctgtcccggggc
ggcctcatcattttcgactacctcatggatgaatccgaggacatgcacagcctcctgctg
actgacaacaacaccctgctggtggccgggctgcagaaccacgtcctcgagatcgacctc
ggcaccgtccaggagacgcagaagtacaccgtggaggtgccaggcatcaccatcatgagg
caatccaaccgcttcttcttctgcggtcacacctcgggcaaggtgtccctgcgcgacctg
cgcaccttcgcggtggagcacgagttcgacgcccactccgggagcttgtcggactttgac
gtgcacgggaacctgctggtgacctgcggcttctccagccgcatgaacggcctggcctgc
gaccgcttcctcaaggtgtacgacctgcggatgatgagggccaccacccccctgcaggtc
cacatcgaccccttcttcctccgcttcatccccacctacacctcccgcctggccatcatc
tcccagacaggccagtgccagttctgcgagcccaccgggctggccaaccccgccgacatc
ttccacgtcaacaccgtggggccgctcatcatgaccttcgacgtgtcggccagcaagcag
gcgctggccttcggcgactccgagggctgcgtccacctctgggccgactctccggaggtg
accttcaacgcctactcccgggagaccgactttgccctgccctgcatggtggacacgctg
ccacacctggactggaaccaggacctggtgccgctgtcgctcatcccggtgccgctgacc
agcgacgcgctgctctccgactggcccgccgccaactccgcgccggcgccgcggcgagcc
cccccggtcgatcccgagatcctgcgcaccatgaagaaagtgggattcatcggctacgcc
ccaaaccccaggaccaagctccgtaaccagattccttatcggttaaaggagatggacaac
gagtttgacaccttcagccaagtccccgagtccccgatcgggcgtgaggaggagccgcac
ctctacagggtggccaagaagtacaggaaggtcaccatcaaatactccaagctggggctg
gaggattttgacttcaagcattacaacaagacgctgtttgcggggctggagccccacatt
cccaacgcctactgcaactgcatgatccaggtgctgtatttcctggagccagtccgctgc
ctggtgcagaaccacctgtgccagaaggaattctgcctgggctgcgagctgggtttgctc
ttccacatgctggacctgtcccgaggagacccctgccaggggagcaactttctgcgggct
ttccgcaccatcccggaggcgtcggcgctgggcttgatcctggcagactcggacgaagcc
acggggaaggtgaacctggggcggctgattcagagctggaaccgtttcatcctgactcag
ctgcaccaggaaacgcaggagcaggagggaccccaggcctaccggggggctggcagcagc
agctttggctcctcgggggactcggtcatcgggcagctgttcagctgtgagatggagaac
tgcagcatgtgtcgctgcgggaaggaaaccgtccgtgtgtcctccacgctgctcttcacc
ctctcctaccccgacagcaccgaaaaaccagccaaggattacgaattcgcccaaatttta
aagcgcagcatctgcttggagcagaacacgcaagcctggtgtgagaactgtgagaaatac
cagcccacggtgcagacccggaacatccgctgcctgccggacgtgctggtcattaactgt
gaggtgaacagctccaaggaggcagatttctggaagacacaggctgagtattccttccag
aaagccatgatgaagagaggaggcttcgacatcaccaagggaaaggagatcactctcggg
gagtggaaggatctggggaaccccgacacggggcattcgtatgcttctgtggaggaactg
aagaacatttggatccctcacgccatcaagatgaggttgaccaagagcaaagagctcgac
gtgagcaactggagcgagagcgatgagctgagcccgatggacgaccccgagtccgtgtac
atctacgacctgatggccaccgtggttcacatcctggattcgcgcaccgggggcagcctg
gtggggcacatcaaggtgggagagacctaccaccagcggaaggagggagtcacacaccag
cagtggtacctcttcaacgacttcctcatcgagcccgtggacaagtgcgaggctgtgcag
tttgacatgagctggaaggttccagccatcctctactacgcccggaggaacctcaacgcc
aagtacaacctcgtcatcaagaaccccatcgaggccagcgtcctgctggctgaagcctcg
ctggcccgcaagcagcgcaagtgccacgccaccttcatccccctcatgctgaacgagatg
ccccaggcaggagacctggtggggctggacgccgagttcgtcacgctgaacgaggaggag
gccgagctgcgcagtgatggcaccaagtccaccatcaagcccagccagatgtcggtggcc
cggatcacctgtgtgcgtgggcagggccccaacgagggcgtccccttcatcgatgactac
atctccacccaggagcaggtggtggattacctgacccagtactccgggatcaagccagga
gacctggatgccaagatctcctccaagcacctgaccaccctcaaatccacctacctgaag
ctgcgtttcctcatcgacgtgggcgtcaagttcgtgggccacgggctgcagaaggacttc
cgtgtcatcaacctgatggtgcccaaggaccaggtgatcgacaccgtgtacctgttccac
atcccgaggaagaggatgatctccctgcgcttcctcgcctggtacttcctggacctgaag
atccagggggagacccacgacagcatcgaggacgcgcggacggcgctgcagctgtaccgc
aagtacctggagctgagcccgcagggctcggagcccgaggagttccggaaggtgctcaag
gggctctacgagaagggccgcaagctggactggaaggtgcccgagcccgacagccagagc
agccccaagcacggggccgtgttcccccccgtgctggccctgtga
DBGET
integrated database retrieval system
