Pseudopodoces humilis (Tibetan ground-tit): 102100198
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Entry
102100198 CDS
T02921
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phi03041
]
102100198
Enzymes [BR:
phi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102100198
Spliceosome [BR:
phi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102100198
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
AAA_19
HA2_N
nSTAND3
AAA_22
Ank_2
ATPase
PhoH
AAA_23
ResIII
Ank_4
UvrD-helicase
AAA_7
AAA_29
ABC_tran
Sigma54_activat
AAA_11
Motif
Other DBs
NCBI-GeneID:
102100198
NCBI-ProteinID:
XP_005530058
LinkDB
All DBs
Position
Unknown
AA seq
1367 aa
AA seq
DB search
MEFPSSFTSTERAFVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSETHAVMTCDLALCTK
HAVRSLIQSFPVTNKERTELLPRTERGNACAVESENKEVNKTSGRLNDGIPQVPVKRGES
EFDSFRQSLPVLEKQEEIVQIIKENKIVLIIGETGSGKTTQIPQFILDDCYKSGTPCRVF
CAQPRRLAAVAVAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLRTLMAGD
STLSTVTHVIVDEVHERDRFSDFLLIKLRDVLKKQNDLKLIISSAALDANLFIRYFGSCP
VIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEETQKNTLAEWCSAQENTNKL
ASRRQKSVPRANQEYKWLDDGGDTVFNQLTEKDVNCLEPWIVKEMDSCLSDIWLHKDTDS
FAQVFHLILTENVSVDYRHSETGATALMISSGRGLLSQVEQLISMGASIHCKSSNGWMAV
DWARRFGQTEVVDMLESYSASFGFGTLDESSLVQKSGSDLSAEDRELLTAYHHSFDDEKV
DLDLIMHLLHSICHSSDAGAILIFLPGYDEIVNLRDRILFDDKRFADNARRYQVFMLHSS
VQTLDQKKVLETPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSLDALSRVTMLK
MGWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQSPELLRMPLQEICLYTKLLA
PINCPVVDFLMKAPDPPPAGTVRNAVHMLKTIDAMDAWEDLTELGYHLTELPVEPHLGKM
VLYAVVLKCLDPVLTIASALACQDPFVLPTLASQKRAAMLCRKRFAAGTFSDHMALLRAF
QAWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNTN
SENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVRFHPTSVLGQTQYKKIAPANGQA
AAIQALPTDWLIYDEMTRAHKTANIRCCSVVTPVTVSLFCGPARLPSNALQASSTFRGGG
VSNDSSDSEMEDKTTAHLALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLRRMRAPSKP
WSQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVACEELPLASTWKSTSSRKSSTE
TELSDSSNAEKVSVKSTSPALHQPKKYKERDILLSKRSSDDRLAQSSVKPAESSSFPSPC
ASPSPVSGKGCKSPSPRQNRPVRYFIMKSSNLRNIDISQQKGIWSTTPSNERKLNGAFWE
SNVVYLIFSVQGSGCFQGFARMGSAIGSERSQDWGSAGFGGVFKVDWIRKESIPFQFAHH
LLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDHIPLAGRKLTEHAK
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggaatttccttctagtttcactagtactgaaagagcatttgttcaccggctctgccag
tctcttggactggtatctaaaagcaaaggaaaaggagccaatcgatacctgactgtaagg
aagaaggatgtgtcagagacacatgcagtcatgacttgtgacttggctctctgtacaaaa
cacgccgttcggagtctaattcagagttttcctgtcacaaacaaggaacgcacagaactc
ctgccaaggacagagcgaggaaatgcctgtgctgttgaatctgaaaacaaagaggtgaac
aagacaagtggtcgacttaatgatggtattccccaggtccctgtgaaaagaggggaatca
gagtttgattccttcaggcaatcactaccagttcttgaaaaacaggaagaaattgtccaa
ataataaaggaaaataaaattgttttgattataggagagactggatcaggaaaaactact
caaatccctcagtttattctggatgattgctacaagagtggaactccctgccgtgtgttc
tgtgctcagccaagacgcttagcagctgttgctgtggctgaaagagtggcagcagaaaga
cgagagaagattggccagactattggttaccagatcagattagaaagcagggtttctcca
aagacactggtaacattctgcactaatgacatgcttcttcgcacgctgatggcaggagac
agcaccctctccaccgtgacacatgttattgtggatgaagtacatgagagagatagattc
agtgacttcttgctaataaaactgagagatgtgctgaagaagcagaatgatttaaaatta
attatttctagtgctgctctagatgcaaatctctttattaggtattttggaagctgccca
gtaatacatatccaaggaagaccttttgaagttaaagagatgtttctggaggacatttta
cgaagcactggttatacaaacaaagagatggtaaagtacaaaaaagagaagcagcaagaa
gagacacagaagaacactcttgctgagtggtgttcagctcaagaaaacactaacaaactg
gcatctcggagacaaaagtcggttccaagggcaaatcaggagtacaaatggttggatgat
ggtggtgacacagtatttaatcaactaaccgaaaaagatgtgaattgccttgaaccgtgg
atagtaaaagaaatggattcctgtctttctgacatctggttgcataaagatactgattcc
tttgctcaggtgttccatcttattttaactgaaaatgtcagtgttgattataggcacagt
gaaaccggtgcaactgctctgatgatttcttctgggagaggccttttgagtcaagtagaa
cagctgatcagtatgggagcaagtatccactgcaaatcatccaatggctggatggctgtg
gactgggctaggcgatttggacagacagaggttgttgatatgttggaatcctacagtgct
tcatttggatttggaactctggatgaaagttccctggtccaaaaaagtggtagtgacctt
agtgcagaggacagagaactactgacagcttatcatcacagttttgatgatgaaaaagtg
gatctggatctgataatgcacttacttcacagcatctgtcatagtagtgatgcaggtgca
attttaatatttcttcctggatatgatgagatagtgaacctgagggaccgtattcttttt
gatgacaagagatttgctgataatgctcgcagataccaagttttcatgcttcattcaagt
gtgcagactttagatcagaagaaagtgcttgaaactccaccttctggcatccgcaaaatt
attctttccactaatattgcagaaaccagcataacagtcaatgatgttgtgtttgtcatt
gactcaggcaaggtgaaagagaagtctttagatgcactgagtcgtgttacaatgctaaaa
atggggtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgtcag
cctggagtctgttttcgtctcttcagcaggctccgatttcagaatatgttggaatttcaa
tctccagaacttctaagaatgccgcttcaggagatctgtttgtacacaaaacttctggct
ccaattaattgtccagttgtagactttcttatgaaagctcctgatcctccacctgctgga
actgtgagaaatgctgtgcatatgcttaagaccatagatgccatggacgcttgggaagat
ctcactgagcttggttatcacctcactgaattacctgtagagccacaccttggtaaaatg
gtgttgtatgctgtagtgctgaagtgcctggatcctgttctgaccattgcctctgctctt
gcctgccaagacccttttgtgctgcccacactggcctcccaaaagcgtgcagccatgctg
tgcaggaagcgttttgctgcagggacgttcagtgaccacatggccctgctcagggctttc
caggcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaacttc
ctatcccaagccacaatggaaatcattgtaggaatgagaacacagttgcttggccagctt
agagcctcaggttttgtgagagccagaggaggagctgatattagagatgtcaatactaac
tctgagaactgggctgtaattaaagctgctttagtggctgggatgtatcccaatcttgtg
catgtagacagagaaagcctggtgttgactgaaccaaaggagaagaaagtgcgatttcat
cctacctctgttcttggtcaaactcagtataaaaagattgccccagcaaatggacaggct
gcagccatccaggctctccctacagactggcttatatatgatgaaatgacaagagctcac
aagacagcaaacatcaggtgctgctctgttgtgacacctgtcaccgtgtccctcttctgt
ggaccagccagactgccaagtaatgccttgcaggcatcttcaacctttcgagggggagga
gtatctaatgatagcagtgacagtgagatggaggacaaaacaactgctcatctggcacta
ctgaagctggatgaatggctccatctcaaactggaccctgaagccgctggtatgctgttg
caacttaggcagaagtggcacagtttgttcctgcgtcgtatgcgagctccttctaaaccg
tggtctcaggttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagaa
cagtctgcaggtctgcagcagccttcaggaattggccagagaccaagacctgtggcttgt
gaagaacttcctttggcatctacatggaagtcaaccagcagtagaaaaagctcaacagaa
actgaattgtctgactcctctaatgctgaaaaggtttcagtgaaatctacatctcccgca
ctccaccagccaaagaagtacaaagaaagagacattttgctctccaaacgatcctcagat
gacagattagctcagtcctcagtgaaacctgcagaaagcagtagctttcccagcccctgt
gctagtccttctccagtatctggaaagggttgcaaatctccttcaccaagacaaaatagg
ccagttcggtactttataatgaaaagtagcaacctgcgaaacattgatatttctcagcag
aagggaatatggtccactacaccaagtaacgaaaggaagctgaatggagccttttgggag
agtaatgtggtttacttaatattttctgttcaagggtctggatgctttcagggttttgct
agaatgggttcagcaatcggaagtgagagaagtcaggactggggatctgctggttttgga
ggtgtatttaaggtggactggatccgaaaagaaagcattccttttcagtttgcacaccat
ttgctcaacccatggaatgacagtaagaaagtacaaataagtagagatggccaggagctg
gaaccacaagttggagagcagttgctgcagctttgggatcatattcctttggcaggaaga
aaactgactgagcatgccaagtga
DBGET
integrated database retrieval system
