KEGG   Pseudopodoces humilis (Tibetan ground-tit): 102100218
Entry
102100218         CDS       T02921                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
phi  Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04382  Cornified envelope formation
phi04510  Focal adhesion
phi04512  ECM-receptor interaction
phi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:phi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102100218 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102100218 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102100218 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    102100218 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:phi04147]
    102100218 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:phi00536]
    102100218 (COL4A1)
Exosome [BR:phi04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102100218 (COL4A1)
Glycosaminoglycan binding proteins [BR:phi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102100218 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 102100218
NCBI-ProteinID: XP_014104070
LinkDB
Position
Unknown
AA seq 1668 aa
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLISPGVLKGEKGFPGQPGLPGPPGAS
GFQGPMGPQGPPGEQGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGEQGIPGLPGSGFKGDKGEPGKPGPRGKPGKDGEPGLKGEPGL
PGGFGIPGRPGDPGTKGDKGERGYPGPPGRMIDAGPIDTFGEKGDPGVSGLPGLKGQKGE
KGFPGAQGIPGPPGRPIPDRVGSPGVPGERGEKGEKGSPGFPSPGIPGRDGFPGPPGLPG
PPGPPGIADGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGEACALCDKVGPPGLPG
PQGLPGPAGFPGQAGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFTYDSILK
GEKGDPGFPGQPGAPGREGRPGKDGFPGLQGPKGAAGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGAAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGIPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGVKGERGFPGVPGLDMPG
PKGDKGSPGQPGVPGSVGLPGLPGPQGAVGLKGSAGPKGEMGVMGTPGLPGTPGPVGDRG
LPGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDMDMVSLKGQKGDPGEKGDHGA
AGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVGEMGLPGT
PGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGAPGEKGEPGRTGSPGLSGDK
GEKGSAGIPGIPGAPGPKGSPGMAGFPGSPGRHGDKGEKGLPGLSGIPGLKGEPGEPGVP
GPAGAIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFPGSPGSPG
IPGLKGEPGYAGPPGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPGL
KGAKGEQGSNGWPGAPGGPGMKGDPGFQGLPGSPGLPGDIGPKGDLGPPGVPGVPGPKGT
PGFPGLKGERGDQGLPGSIGLQGPPGPPGPFQLIKGDPGLPGPVGPVGLKGFPGLPGPKG
QQGVTGPSGVPGPPGSPGFDGQPGQKGEAGPFGPPGPRGFPGPPGPDGLPGAMGPPGAPS
VAHGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP
FLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAVH
SQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT
CNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq 5007 nt   +upstreamnt  +downstreamnt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtccgcc
gcgggatgttccggttgtggaaaatgtgattgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacaaggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagtatcaggctttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactggaagtataggacctcca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttataagtcctggtgtg
ctaaagggtgaaaaagggtttcctggccaacctggactgcctggtccacctggagcttca
ggatttcagggaccaatggggccacaaggccctccaggagagcaaggtcccccagggcca
ccaggacttccaggcgagaagggctacatgggcttggggtttcagggtcccaaaggtgaa
aagggagaacaaggggtaaggggccccccaggacccccaggaccagcacctcatatgaag
gaaaaagggagtgaaatcataaagggagaaaagggtgatccaggcgaaaagggcgaacag
ggaatcccaggattgccaggttcaggtttcaaaggagacaagggtgagcctgggaagcct
ggtccacgtggaaagcctggaaaagatggtgaaccaggactgaaaggagaacctggtttg
cctggagggtttgggattccaggacggcctggggatcctggcaccaagggtgacaaaggg
gagcgaggttatccaggacctccaggaagaatgatagatgctggaccaatagataccttt
ggtgaaaaaggagaccctggagtttcaggtttgcctggactgaaaggtcaaaaaggtgaa
aaaggcttccctggtgcacaaggaatcccaggacctccaggtcgaccaattccagaccgg
gtaggatcacctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctccggga
ttcccttcacctggaatccctggaagagatggtttcccaggtccccctgggttgcctggc
ccaccaggacctcctggcatagcagatggaattgatcagtgccagcagggagaacctggt
gcaccaggtagtcctggacttccaggaagagatggatttccaggagagatgggagagaaa
ggtgacaaaggtgaagcctgtgccttgtgtgacaaagtaggacctcctggacttccagga
ccacagggactgccaggtccagcaggttttccaggacaagcgggtttcaagggtgacaga
ggcttacctggacttgatggccttccgggggtgcctgggccccccggcactccaggactt
atgggcagccctggggcaaaaggagaacctggagattttacttatgattctatcctgaaa
ggcgaaaagggagatcctggtttcccaggacagccaggcgctcctggacgagaaggaaga
ccaggaaaagatggatttccaggtcttcagggtccaaaaggagcagcgggtacagctggc
ttgaaaggagaacgtggtccccctggccagcctggattccctggagtgcgtggtgaaaga
ggttttcctggccctcctgggataggtgctgcaggattacctggtgaaaaaggagacaga
ggctttgctggaaccccaggtttaccaggacttccaggagcaaagggtgaagcaggacga
actatatcgctccctggacctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccaggtatacctggcctaccaggagaa
aaaggtgctgttgggcagccaggtatagggttccctggacctccaggtcccaaaggtttc
caaggtcagccaggctcacctggtctgccaggaactccaggaacccctggtctggatggt
ttgccaggagttccaggtttacaaggccaaaagggtgaacctggtgtaggtctgcctggc
cctaagggattgccaggcccccctggcccagctggtatccctggagaaaagggaaatcca
ggactgcctggtttacgtggcgaacaaggctttccaggcatacctggacagcaaggattc
agaggtgaccctggtctcccaggtctccaaggcttgcagggccctccaggtgcaccaggg
ctgggccctccaggattgccaggacctgccgggcagccgggaccccagggaccaccagga
tttcctggagtaaaaggagaaaggggcttccctggtgtcccaggtctagatatgccagga
ccaaaaggggataaaggcagcccaggccagccaggagtcccaggctctgtggggttacct
ggcctgccaggtccacagggggctgttggactgaaaggatcagcaggacccaaaggagaa
atgggagttatgggaactcctggattaccaggaactcctggaccagttggagatagaggg
ttacctggtgaaaaaggtagccaaggtttcaaaggtgtaattggaccacagggtgatcct
ggtgttaagggagataaaggtgaagctggtctcccaggaaaacctggaacaatagacatg
gacatggttagcctcaaaggccagaagggagatccaggagaaaaaggcgaccatggagca
gcaggagaaaaagggctacgtggggattatggagaaccaggaattccagggagagatggt
gaacctggtactccaggacaaccaggaccaaaaggtgatcaaggccccccagggtaccca
ggggatccaggagttccaggacaaaaaggatcagttggtgaaatgggtttgccaggaaca
cctggagaaaagggtcttcctggagtacccggttcaccaggcacaccagggttccctggg
caaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttccaggg
gctcctggtgagaagggagaaccaggaagaacgggcagtccaggtttatctggagacaag
ggtgaaaaaggtagtgcaggaattcctggaattccgggtgccccaggtcccaaaggatcc
ccaggcatggcaggatttccaggaagccctggccgtcatggagacaagggtgaaaaagga
cttcctggcttaagtgggattccaggtttaaaaggagaaccaggtgaacctggtgttccg
ggtcctgctggtgccattggtcagaagggtgaaccaggttatgatgggattccaggtgct
gctggtgcaaagggtgaacaaggtcttccaggtagaggacttccaggatttccaggtgca
aagggagataaaggtgcaaaaggtgaagtgggttttcccggatccccaggaagtccaggg
atcccaggcctgaaaggggagccaggatatgcaggtccaccaggccctaaggggagccaa
ggtcttcctgggctaccgggaagtgcaattgaaggccctaaaggagacagagggccccaa
ggccaacctggtcttccaggtttaccgggtccaacagggccaccaggacctccaggtctg
aaaggggccaaaggagagcaagggagcaatggctggccaggggctcctgggggtccagga
atgaaaggtgatccaggcttccaaggactgccaggtagtcctggtttgccaggagatatc
ggtccaaagggtgatcttggacctccaggagttccaggtgttccaggtccaaaaggaact
cctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctataggt
ttacaaggcccaccaggcccaccaggtcctttccagcttattaaaggggatcctggctta
cctggacctgtaggaccagttggtctcaagggattcccaggacttcctggtcccaaagga
caacaaggggtgacaggaccttcaggtgtacctggaccacctggtagtcccggctttgat
ggtcaacctgggcagaaaggagaagctggtccttttggtcccccagggcccagaggattc
ccgggtccacctggccctgatggcttgcccggggctatgggccccccaggggcaccatct
gttgctcatggcttccttgtcaccagacacagtcaaaccatcgaagaaccatcgtgtcca
tttgggacaaggctgatttaccacggctactccttgctttatgtacaaggcaatgaaaga
gcgcatggccaagatctgggcacagcaggaagctgtcttcgtaaatttagtaccatgcct
ttcttattctgcaatatcaacaacgtctgtaattttgcatcaaggaatgactactcctac
tggctgtcaactcctgaacccatgccaatgaacatggctcctatcactggtgataatatc
agaccattcatcagcagatgctctgtatgtgaagctcctgctatggtaatagctgttcac
agtcaaacaattcaaataccaccgtgtcctgagggctggagttcactttggattggttac
tcctttgtcatgcacaccagcgctggtgcggagggctctggccaggccctggcgtcccct
ggttcctgcctagaggagttccgcagcgctcccttcattgagtgccatggccggggcacc
tgcaattattatgcaaatgcttacagcttctggcttgccactatagaaaggaatgagatg
ttcaagaaaccaactccgtcaactttgaaagccggggatctacgctcaaatgttagccgt
tgtcaagtctgtatgagaaaaacataa

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