Pseudopodoces humilis (Tibetan ground-tit): 102100396
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Entry
102100396 CDS
T02921
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03013
Nucleocytoplasmic transport
phi03015
mRNA surveillance pathway
phi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102100396
09122 Translation
03013 Nucleocytoplasmic transport
102100396
03015 mRNA surveillance pathway
102100396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102100396
03041 Spliceosome [BR:
phi03041
]
102100396
Enzymes [BR:
phi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102100396
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102100396
Spliceosome [BR:
phi03041
]
Complex C
Other components
EJC/TREX
102100396
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102100396
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Cas3-like_C_2
TMEM128
Motif
Other DBs
NCBI-GeneID:
102100396
NCBI-ProteinID:
XP_014118443
LinkDB
All DBs
Position
Unknown
AA seq
380 aa
AA seq
DB search
QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVWGVWGFWGPPVQVAVFF
GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRR
DVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL
KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSR
YQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT
FVSDENDAKILNDVQDRFEVNISELPDEIDISSYSERRPGGSGGFCRIGLERVGAGLCVG
VAPIKGEVGVVCAEGAGLCV
NT seq
1145 nt
NT seq
+upstream
nt +downstream
nt
tccagcacgagtgcatcccccaggccatcctgggcatggacgtgctgtgccaggccaagt
ccggcatgggcaagacggccgtgttcgtgctggccacgctgcagcagctggagcccgtca
ctggccaggtctggggggtctggggattttggggtccccccgtgcaggtggcggtgtttt
tcgggggtctctccatcaagaaggacgaggaggtgctgaagaagaactgtccccacatcg
tggtggggaccccgggccggatcctggcgctggcgcggaacaagagcctcaacctcaaac
acatcaaacatttcatcctggacgagtgcgacaagatgctcgagcagctcgacatgcgcc
gggacgtgcaggagattttccgcatgacgccgcacgagaagcaggtgatgatgttcagcg
ccaccctgagcaaggagatccggcccgtctgccgcaagttcatgcaggaccccatggaga
tcttcgtggatgacgagaccaagctgacgctgcacgggctgcagcaatattacgtcaagc
tcaaggacaacgagaagaacaggaaactcttcgacctgctcgacgtgctcgagttcaacc
aggttgtgattttcgtcaagtccgtgcagcgctgcatcgccctggcgcagctgctggtgg
agcaaaacttcccggccatcgccatccaccgcgggatgccgcaggaggagaggctgtccc
ggtaccagcagttcaaggacttccagcgccggatcctggtggccaccaacctgttcggcc
gcgggatggacatcgagagggtcaacatcgccttcaactacgacatgcccgaggactcgg
acacctacctgcaccgggtggcgcgggccgggcgtttcggcaccaagggcttggccatca
ccttcgtgtcggacgagaacgacgccaaaatcctcaacgacgtccaggatcgcttcgagg
tgaacatcagcgagctgcccgacgagatcgacatctcctcctacagtgagcgccgcccgg
ggggctctggggggttttgccggatcggcctcgagcgtgtgggggcggggctttgtgtgg
gagtggcgcccataaaaggcgaggtgggcgtggtctgcgctgagggggcggggctttgtg
tgtga
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integrated database retrieval system
