Pseudopodoces humilis (Tibetan ground-tit): 102100419
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Entry
102100419 CDS
T02921
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102100419 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102100419 (PARN)
Enzymes [BR:
phi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102100419 (PARN)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102100419 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
102100419
NCBI-ProteinID:
XP_005522951
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEVIRSNFKDNLNKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDDTEERYIMKSFNFYIFPKPFNRNSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNSTKCPVTIPEDQKKF
VDKVVEQIEDLLKNEESESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNSFTGTSTVGKRSMSPIEEETGSDDMEEGEGQDPENDQTDSCAES
LPDGKKRAKKFKKIKTEQVPAGSLTTSSTGIFEVPETW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcaggagcaattttaaggataaccttaacaaagtgtatgaagccattgaa
gagtcggacttcctggccatcgatggagagttttcagggatcagtgatgggccttcagtt
agtgcattaacaaatggctttgacactccagaagaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggtctttgcacttttaaatatgatgacacagaa
gaaaggtatataatgaagtcatttaacttctatatttttccaaaaccctttaacagaaat
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaacggaattccttatttaaatcaggaagaagaaaga
cagctacgggaacagtatgatgaaaaacgttctcaagccaatggtgcaggatctctgtca
tacatttctcctaattccacaaagtgccctgtaacaattcctgaagatcagaaaaaattt
gttgataaagtagtggaacagatagaagacttactaaagaatgaagaaagtgaaagtttg
gaactggagccatgtacaggatttcaaaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccatgtggaaactctggagtcagataagaaggagagatatattgtt
attagtaaggtagatgaagaggaacgaaaaagaagagagcagcagaaacaagcaaaagaa
caggaagaattgaatgatgctgtaggattttccagagttgttcatgccattgctaattct
ggcaagcttgttattgggcacaacatgctgctggatgttatgcacaccatacatcagttc
tattgtcctctacctgatgacctaagtgagttcaaggaagtaacatcatgtgtctttccc
cggttactggatactaaattgatggcaagtacacaaccttttaaggagatcattaataat
acatcgcttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaaggatttccaagttatgatacagcatctgaacaactccatgaagcagga
tatgatgcttatattactggactgtgcttcatttccatggctaatttcctaggttcattc
ctcagtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttg
cagcccaaacgagatcatgttcttcatgttacttttcccaaagagtggaagactagtgac
ctataccagcttttcagtgcctttggtaacattcaggtttcatggattgatgatacatca
gcatttgtatcattgagccagccagagcaagtacaaatagctgtaaacaccagccggtat
gctgaaagttataggatccagacatatgcagaatatgtggagaaaaaacatgaagaaaaa
caagccaagagaaaatgtacagaagatagctggaaggagatggagaggaagaggttaaaa
acccagtgcacaccttacgtttcccagagtcgatactactgtgttaacagttttacaggt
accagtacagtgggaaagagaagcatgagccctattgaggaagaaactggttctgatgat
atggaagagggagaaggccaagatccagaaaatgatcagacagactcctgtgcagagtct
cttccagatggtaagaagagagccaaaaagtttaaaaagatcaagacagaacaagttcca
gcaggaagcctcacaactagttccactgggatctttgaggtccctgaaacatggtag
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