Pseudopodoces humilis (Tibetan ground-tit): 102100976
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Entry
102100976 CDS
T02921
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102100976 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phi03041
]
102100976 (PRPF8)
Spliceosome [BR:
phi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102100976 (PRPF8)
Complex C
U5 SnRNP specific factors
102100976 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
102100976
NCBI-ProteinID:
XP_005525854
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPNPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtgttcccgtaccgcggcggctgcgccccggtgcccaacccgctggcgccg
ctgcccgactacatgtccgaggagaagctgcaggaaaaagcccgcaagtggcagcagctg
caggccaagcgctatgcggagaagaggaaattcggcttcgtggacgcgcagaaggaggac
atgccccccgagcatgtccgcaaaatcatccgcgaccacggcgacatgaccaataggaag
ttccggcacgacaagcgcgtctacctgggtgctctgaagtacatgccccatgctgtgctg
aagctcctggagaacatgcccatgccctgggagcagatccgagacgttcccgtcctgtac
cacatcactggcgccatctcctttgtcaatgagatcccctgggtcatcgagcctgtctac
attgcccagtggggctccatgtggattatgatgaggcgagagaaaagggataggcgtcac
ttcaagaggatgagattccccccgtttgatgatgaagagccccctctggattatgctgat
aacatcctggatgtggagcccctggaagccattcagctggagctggatccagaggaggat
gcccctgtgctggactggttctatgaccaccagcctctgaaggacaacaggaagtatgtc
aacggctccacgtaccagcgctggcagttcaccctgcccatgatgtccaccctataccgc
ctggccaaccagctgctcactgacctggtggatgacaactacttctacctgtttgacctg
aaagcgttcttcacctccaaggcactgaacatggccattcctggaggtcccaagtttgag
ccccttgtcagagacatcaatcttcaggatgaagactggaatgaatttaatgacatcaac
aaaatcatcatcaggcagcccatcaggacagagtacaaaatcgctttcccgtacctgtac
aacaacctgccgcaccatgtccacctcacctggtatcatactccaaacgtcgttttcatt
aaaacagaagatcctgacctcccagctttttacttcgatcctttgatcaaccccatttcc
cacagacattctgtcaagagccaggaaccactgcctgatgacgatgaagagtttgagttg
ccagagtttgtggagcctttcctgaaggatacccctctctacactgataacacagccaat
ggcattgccttgctgtgggccccacgacccttcaatctgaggtctggcaggacccggaga
gctctcgacatcccgctggtcaagaactggtaccgtgagcactgcccagcaggacagcca
gtcaaggtgagagtctcctaccagaagctcctgaaatactatgtcttgaatgcactcaaa
cacagacctcccaaggcccagaagaagaggtacctgttccgctccttcaaggccaccaag
tttttccagtcaaccaagctggactgggtggaagttggcctgcaagtgtgtcgccagggc
tacaacatgctgaacttgctgatccacagaaagaacctgaattaccttcacttggattac
aacttcaacctgaagcctgtgaagaccctcaccacgaaggaaagaaaaaaatcccgtttt
gggaatgctttccatctgtgccgagaggtcctgaggctgactaagctggtggtggacagc
cacgtccagtacagactgggaaatgtggatgcatttcagctggcagatggcctgcagtac
atctttgcccacgtgggtcagctcacggggatgtaccggtacaaatacaaactgatgagg
caaattcgaatgtgcaaggacctgaaacatctcatctactacaggtttaacacagggcct
gtgggcaaaggtcctggctgtggtttctgggctccaggctggagagtgtggctgttcttc
atgaggggcatcactccactgctggaacgctggctggggaatttgctggccaggcagttt
gaaggccgtcactcgaagggtgtcgcaaagactgtcacgaagcagcgtgtggagtctcac
tttgacctggagctcagggcagctgtgatgcatgacatcctggacatgatgccagaaggg
atcaagcagaacaaagccagaaccatcctgcagcacctgagtgaggcttggcggtgctgg
aaggccaatattccctggaaggtgccagggctgccaactcctattgagaacatgatcctg
aggtatgtgaaggccaaagctgactggtggacaaacacagctcactacaaccgggagcgg
atccgtcggggagccactgttgacaaaaccgtctgtaagaagaacctgggcaggctgacc
agactctacctgaaagctgaacaggaacggcagcataattatctgaaggatgggccttac
atcactgcagaagaggctgttgctgtgtacacaaccacagtgcactggctggagagcagg
aggttctctcccattcccttccccccactgtcctacaagcatgacaccaagttgctgatc
ttagccctggagaggctgaaggaagcttacagtgtgaaatcacgactgaatcagtcacag
agagaggagctgggcttaattgagcaagcttatgataatccccatgaagctctgtccaga
atcaagcgacatctgttgactcagagagccttcaaggaggtgggaattgagttcatggat
ctctacagccacttggtccctgtttatgatgttgagcccctggagaagatcacagatgct
tatctggatcagtacttgtggtatgaggccgataagcgaagactcttccctccttggatc
aaacctgctgacactgaaccacccccactgctggtgtacaagtggtgccaaggcattaac
aacctgcaggatgtctgggaaacaagtgaaggggaatgcaatgtgatgctggaatctcgg
tttgagaagatgtatgagaagattgacctgaccttgctcaacaggctgctgcgtctcatc
gttgatcacaacattgctgactacatgacagccaagaacaacgtggtgatcaactacaag
gacatgaatcacacaaactcctatgggattattcgtgggctgcagtttgcttccttcatt
gtccagtactatgggcttgtgatggacctcctggtgctgggcctgcaccgggccagtgag
atggctgggcctccccagatgccaaatgacttcctcagcttccaggacattgccacggag
gtggcccatcccattcgcctcttctgcagatacattgacaggattcacatcttcttcaga
tttacagcagatgaggcaagagacctgatccagcggtacctgacagagcacccagacccc
aacaacgagaacatcgtgggctacaacaacaagaagtgctggccccgggacgctcggatg
cgcctcatgaagcacgacgtgaaccttggccgtgctgtgttctgggatatcaagaaccgt
ttgccccgctcagtgaccacggtgcagtgggagaacagcttcgtgtccgtgtacagcaag
gacaaccccaacctgctgttcaacatgtgcggcttcgagtgccgcatcctgcccaagtgc
cgcaccagctacgaggagttcacccacaaggacggggtctggaacctgcagaacgaggtc
accaaggagcgcacggctcaatgcttcctgcgtgtggatgatgagtctatgcagaggttt
cacaacagagtgaggcaaatcctcatggcctctggctccacaaccttcactaagattgtg
aataaatggaacacagctttgattggcttgatgacttatttccgggaagctgttgtaaat
actcaggagcttcttgatttgctggtgaagtgtgagaataaaatccagactcggatcaag
attggcctgaattccaaaatgcccagccgttttcctcctgtggtgttctacacccctaag
gagttgggggggctgggcatgctctccatgggccatgttctcatccctcagtctgacctg
aggtggtccaagcagacagatgttggcatcactcacttccgctcgggaatgagtcatgag
gaggaccagctgatcccaaatctgtatcgttacatccagccatgggagagtgaattcatt
gactctcagagggtgtgggcagagtatgccctgaaacgacaggaggctatagcccagaac
aggcgtctgacactggaggatctggaggactcgtgggacaggggaattcctcggattaac
acccttttccagaaggaccggcatactcttgcctatgataaaggatggagagtcagaact
gacttcaaacagtatcaggtgctgaagcagaacccgttctggtggacacaccagcgccac
gatggcaagctctggaacctgaacaattaccgcacggacatgatccaggctctgggcggg
gtggaagggatcctggagcacacgctcttcaagggcacctacttccccacgtgggagggt
ctcttctgggagaaggccagtggctttgaagagtccatgaagtggaagaagctgacaaat
gcccagagatcgggtttgaaccaaattccaaacagaagattcactctctggtggtctcct
accattaacagagccaatgtgtatgttggcttccaggtgcagctggatttgacagggatc
ttcatgcatggcaaaatccccacgctgaagatttccctcatccagattttccgagctcac
ttgtggcagaagatccatgagagcattgtcatggatttgtgtcaggtgtttgatcaagag
ctggatgctctggagattgagacagtgcagaaagagacaatccatcccaggaagtcctac
aagatgaattcctcatgtgcagatatccttctctttgcttcctacaagtggaatgtgtca
cgtccatccttgctggcagattccaaggatgtgatggacagcaccaccacccagaagtac
tggattgacatccagctgcgctggggcgactacgactcccacgacatcgagcgctacgcc
agggccaagttcctggactacaccacagacaacatgagcatctacccctctcccactggg
gtgctcattgccattgatctggcctacaacttgcatagtgcttatgggaactggttccct
gggagcaaacctctgatccagcaggccatggccaaaatcatgaaagcaaaccctgccctg
tatgtgttgagggaacgaatccgcaaagggctgcagctctactcctcagagcccacagaa
ccctacctgtcctcccagaactatggggagctcttctccaaccagatcatctggtttgtg
gatgacaccaacgtgtacagagtcaccatccacaagacttttgaagggaatttgaccaca
aaacccatcaatggagccattttcatcttcaaccccagaactggacagctcttcctgaag
atcatccacacatctgtgtgggcaggacagaagcgtctgggacagctggccaagtggaag
actgctgaggaagtggctgccttgatccgatcccttcctgtggaggagcagccaaagcag
atcattgtgacacggaagggcatgctggacccacttgaggtgcacttgctggatttcccc
aatattgtgatcaaaggctcggagttgcagctgcccttccaggcctgtctgaaagtggag
aagtttggtgatctcatcctgaaggccactgaaccccagatggttctcttcaatctctat
gatgactggctgaaaaccatctcttcctacacagcattctcccgtctgatcctgattctt
cgggcgctgcacgtgaataatgatcgagccaaagttatcctgaagccagacaagacaacc
atcacagagcctcaccacatctggccaaccctgacagatgaggagtggatcaaggtggag
gtgcagctgaaggatctcatccttgctgactatggcaagaagaacaacgtgaacgttgca
tccctgacccagtcagagatccgagacatcatcctgggcatggagatctctgccccatcc
cagcagaggcagcagattgcagaaatcgagaagcagaccaaggagcagtcgcagctgacg
gccacgcagacccgcacagtgaacaaacacggggatgaaatcatcacctccaccaccagc
aactacgaaacacagaccttctcctccaagactgagtggagggtcagagccatttctgct
gccaacctccacctgcggacaaaccacatctatgtctcatcagatgacataaaggagaca
ggttacacctacatccttcccaaaaacgtgttgaagaagttcatctgcatctcagacctg
cgggcccagattgcaggttacctgtatggagtgagccctccagacaacccccaggtgaag
gagatccggtgcattgtgatggtgccccagtgggggacacaccagaccgtgcacctgcca
gggcagctgccacagcacgagtatctcaaggaaatggaacctctgggatggattcacacc
caaccaaacgagtcccctcagctctcaccacaggatgtcaccacccacgccaaggtcatg
gctgacaacccctcctgggatggggagaagaccatcatcatcacctgcagtttcacccct
ggctcctgcacgctgacagcctacaaactgaccccgagcgggtacgagtggggccggcag
aacacggacaaagggaacaatcccaagggttacctcccctcccactacgagagggtgcag
atgctcctgtccgaccgcttcctcggcttcttcatggtcccagctcagggctcctggaac
tacaacttcatgggtgtccgccacgaccccaacatgaagtacgagctgcagctcgccaac
cccaaggagttttaccacgaggtccatcgcccctctcacttcctcaacttcgcgctgctg
caggagggggaggtttactctgccgaccgcgaggatctctacgcctaa
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integrated database retrieval system
