Pseudopodoces humilis (Tibetan ground-tit): 102101630
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Entry
102101630 CDS
T02921
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102101630 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102101630 (XAB2)
03041 Spliceosome [BR:
phi03041
]
102101630 (XAB2)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102101630 (XAB2)
Spliceosome [BR:
phi03041
]
Complex B
Other components
Prp19-related factors
102101630 (XAB2)
Complex C
102101630 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_19
TPR_12
TPR_8
TPR_2
Suf
TPR_15
TPR_16
TPR_7
PPR
TPR_MalT
ARM_TT21_C
TPR_1
TPR_18
Motif
Other DBs
NCBI-GeneID:
102101630
NCBI-ProteinID:
XP_005533597
LinkDB
All DBs
Position
Unknown
AA seq
744 aa
AA seq
DB search
MHKMPRIWLDYCQFLAEQGRITRTRRTFDRALRALPITQHRRLWPPYLSFVRKHPLPETA
VRVFRRFLKLCPEEAEQYVSYLRSVGRLDEAAQVLARLVNDERFVSRQGKSNYQLWQELC
ELLSQHPDRVRSLDAGGIIRGGLTRFTDQRGRLWGALADCYVRCGHLEKARDVYEEAVQT
VMTVRDFTQVFDSYARFEESVIGALLDTQAQLGRGQDEEVELELRLARFERLMARRPLLL
NSVLLRQNPHNVHEWHKRVALHQGQPDKIIQTFTEAVRTVDPQRATGRPHELWVAFARFY
EDNGQLDDARSILSRATRVRFRRVEDLAAVWCEFGELELRHQRHQEALRVLRKATALPAK
RAEYFDSSEPVQNRLYKSLKVWSMLADLEESLGTFQSTRAVYERILDLRIATPQIVINYA
LLLEEHGRFEDSFKAYERGIALFRWPHVGDLWLTYLSKFVARYGGRKLERARDLFEQALD
GCPPQHAKTIYLLYAQLEEQFGLARRAMAVYERGTRAVPPAQQRDMFHIYIRRAAELFGV
THTRPIYQRAIEVLGDDAARELCLRFADMECKLGEVDRARAIYTYCSQICDPRITGSFWQ
TWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSG
LDEMKLLEQRAEALAAEAQRDTPRPTQQVLFVRAEAPPGAEPSLSQQGNPEEIDLGEDEG
DEPDEVQLEQKQVPASVFGGLKDD
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagatgccgcggatctggctggattactgccagttcctggcggagcagggtcgc
atcacgcggacgcgccgcacgttcgaccgggcgctgcgggcgctgcccatcacccagcac
cgccgcctctggccgccctacctgagcttcgtccgcaaacaccccctgcccgagaccgcc
gtgcgcgtcttccgccgcttcctcaagctgtgccccgaggaggcagagcagtacgtgtcc
tacctgcgctccgtgggccgcctggacgaggccgcgcaggtgttggcccggctggtgaac
gacgagcgcttcgtgtcccgccaggggaagtccaactaccagctgtggcaggagctgtgc
gagctgctgtcccagcaccccgaccgcgtgcgctcgctggacgccgggggcatcatccgg
ggcgggctgacgcgcttcaccgaccagcgcgggcggctctggggggccctggccgactgc
tacgtgcgctgcggccacctggagaaggcccgggatgtgtacgaggaggccgtgcagacg
gtgatgaccgtgcgggatttcacgcaggtgttcgacagctacgcgcgcttcgaggagagc
gtcatcggcgccctgctggacacccaggcccagctgggccggggccaggacgaggaggtg
gagctggagctgcgcctggcgcgcttcgagcgcctcatggcgcggcggccgctgctgctc
aacagcgtgctgctgaggcagaacccccacaacgtccacgagtggcacaagagggtggcc
ctgcaccagggacagcctgacaagatcatccagaccttcacagaggccgtccgcaccgtg
gatccccagcgcgccaccggccgcccccatgagctctgggtggctttcgcccgcttctac
gaggacaatgggcagctggacgatgccaggtccatcctgtcacgggccacgcgggtgcgg
ttccggcgcgtggaggatttggccgcggtctggtgcgagttcggggagctggagctgcgc
caccagcgtcaccaggaggccctgagggtgctgcggaaagccacggcgctcccggccaaa
cgcgccgagtacttcgacagctcggagcccgtccagaaccggctctacaaatccctcaag
gtgtggtccatgctggccgacctggaggagagcctgggcaccttccagtcgacacgtgct
gtctacgagcgcatcctggacctgcgcatcgccaccccacagatcgtcatcaactacgcg
ctgctgctcgaggagcacggccgcttcgaggacagcttcaaggcgtacgagcgcggcatc
gcgctgttccggtggccgcacgtgggggacctgtggctcacgtacctgtccaagttcgtg
gcccgctacggtggccggaagctggagcgggcgcgggacctcttcgagcaggcgctggac
gggtgccccccgcagcacgccaagaccatctacctgctgtacgcgcagctggaggagcag
ttcgggctggcgcgccgggccatggccgtgtacgagcgcggcacgcgggcggtgccgccg
gcccagcagcgcgacatgttccacatctacatccggcgcgccgccgagctcttcggcgtc
acccacacgcggcccatctaccagagagccatcgaggtgctgggggatgacgccgcgcgg
gagctgtgcctgcgattcgccgacatggagtgcaagctgggagaggtggatcgggcccgc
gccatctacacctactgctcgcagatctgcgacccccggatcacgggcagtttctggcag
acgtggaaggagtttgagatccggcacggcaacgaggacacgatccgggagatgctgcgc
atcaagcgcagtgtgcaggccacctacaacacccaggtcaacttcatggcctcgcagatg
ctcaaggtgtccggcagcgccaccggcacagtgtcggacctggccccgggacagagcggc
ctggacgagatgaagctgctggagcagcgagccgaggcgctggcggccgaggcccagcgg
gacacgccccgccccacccagcaggtgctgtttgtcagggccgaggcccccccgggggca
gagccctccctgtcccagcaggggaaccccgaggagatcgacctgggcgaggacgagggg
gacgagccagacgaggtgcagttggagcagaagcaggtcccagcctcggtgttcgggggg
ctcaaggacgactga
DBGET
integrated database retrieval system
