Pseudopodoces humilis (Tibetan ground-tit): 102101909
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Entry
102101909 CDS
T02921
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04382
Cornified envelope formation
phi04510
Focal adhesion
phi04512
ECM-receptor interaction
phi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102101909 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102101909 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102101909 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102101909 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phi04147
]
102101909 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
phi00536
]
102101909 (COL4A4)
Exosome [BR:
phi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102101909 (COL4A4)
Glycosaminoglycan binding proteins [BR:
phi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102101909 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102101909
NCBI-ProteinID:
XP_005527165
LinkDB
All DBs
Position
Unknown
AA seq
1678 aa
AA seq
DB search
MALTKDSFERIKWLITAAWWLLIVFSAQGIHGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGDLGAQGPIGALGSTGPAGLPGEKGQRGENGRPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGMEGPRGKHGLDGCNGSRGDPGFPGENGYVGPRGPYGIPGQKGEKGNSVYISHFGKGLP
GERGDPGPPGMPGPRGSRGTTGPSGYPGHPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGLPLLVGPPGAQLFKGQKGQKGLPGVTGDRGPRGPKGILGRGEKGEKGLPGF
PGLRGHPGSYGPAGFPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPLPPVK
GPRGDPGFPGPVGEMGSVGPIGPSGLVGRPGYDGTSLPGLPGVSGEPGPQGFQGDPGLPG
IGELIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGAKGQIGLPGRKGAKGE
KGSQGLCSCSAGPPGPRGVQGPPGTQGRKGQMGYPGRHGEKGDPGLSGAVGPPGLPGTPG
SAGQHGEKGERGDPGRVRIKGLKGERGPAGLPGFPGQRGLDGRDGELGLPGEKGAKGDSG
VAIPGEKGFPGLPGPPGVKGQMGLPGLGLPGLPGARGSPGDFGDMGDVGPPGPKGQKGET
VCITSPYPGNPGPPGFKGVQGQKGLKGLPGHPGPNGFDGQKGHRGRPGAGIPGPEGFRGT
AGDPGDEGERGATIDGKNGLPGPPGTDGQKGLPGDTTYGPPGIPGNRGLPGPPGAQGARG
NPGIPGLQGQPGTPGFPGAKGFRGPEGDIGAPGCPGFPGSPCVPGLPGPPGLRGVMGLPG
PQGLPGFKGQRGDRGLAGPPGIKGLKGSLGSRGLPGPPGTRGPPGLPGSNGPIGFPGETG
SKGVQGPQGFPGLPGIQGPMGILGVKGEEGKMGLPGPSGECGDMGIKGERGPPGDSGCVN
LRLEKGQMGDPGFPGEHGLRGERGEKGNTGFRGTRGFPGKNGVPGLPGDQGDTGVMGFPG
SRGLPGPKGLQGITGFQGEPGDQGDTGLPGNPGYPGLTGPKGCKGKRGDPTPLLGTHGQK
GPPGDPGLPGLRGFPGEKGLPGIQGQPGRPGSKGDPGYPGIPGLPGATGPQGLPGEPGEK
GKPGILGPPGLQGLPGFQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGPPGYSGEIG
PKGDRGEPGWPGISIPGSPGERGFPGFPGRRGPVGPTGPMGRSPDSASPGPPGDQGLPGL
DGIRGDPGNPGPPGETIFVRGDPGDTGIRGAPGNPGPRGQQGAKGPPGSQGREGPKGPMG
VHGPQGPPGASGQPGDQGFPGRPGPRGPTGDPGEPGKIDDSCPTIPGPPGEAGQRGEDGS
AGLPGPIGHPGPQGIKGEEGSCGLPGQDGLPGAPGPPGDQGSRGEQGYAGPQGPPGQTGV
PGQPGPQIRSASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGLAGS
CLPVFSTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMAPLSEEEIRPYISRCAVCEAP
AQAVALHSQDQSIPPCPFNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSAPFI
ECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRKKISRCQVCLKHG
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgttttttcagctcaaggaattcatgggggaggatatgcttacattgatcca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaaggggtcag
cctggtgatctgggagctcaaggtccaattggggccttgggatctacaggaccagctggt
ctgccaggggagaaaggacagagaggtgagaatgggaggcctggaccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggcctc
ccaggaatggaaggacccagaggcaagcatggtttggatggctgcaatggctcaagggga
gacccaggatttccaggagaaaacggttatgtgggaccaagaggtccttatggaattcca
gggcagaaaggagaaaaaggaaattcagtgtatatttcacattttggaaaaggacttcca
ggagagagaggtgatcctggaccccctggcatgcctggacctagagggtcaagaggtaca
acaggcccatctggatacccaggccatccaggcttgcctggtattccaggttaccctggt
ttaccaggtgaacagggaaatccagggattggagtggatggacaaaagggggagccgggc
gacattggactgcctgggccgcctgggttaccgctgttagttggacctcctggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggggtgacaggagacagagggcca
cgtggacccaaaggcatacttgggagaggagaaaagggtgaaaaaggccttcctggattc
cctggattgcggggtcatcctggatcttatggacctgcaggttttcctggaatgaagggt
gaaacaggatttgctggttttcctggacagcctggctatccaggcatacagggcgatcca
ggagagaaagggcccccaggtcctcctggagctgttggaactccactgcctcctgtaaaa
ggcccacgaggagatcctgggtttccaggtcctgttggtgaaatggggtcagttggacca
attggtccttcaggccttgtaggaagaccaggatatgatggaacaagtcttcctggactg
ccaggagtaagtggggaaccaggaccccaaggttttcaaggggaccctggtttgcctgga
ataggtgaattaatcccaggaagaccaggatttcctggaccaccaggcctcccagggcag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggagcaaaaggtcagataggccttccaggaagaaaaggtgcaaaaggagag
aagggaagtcaaggcctctgctcatgtagtgctggtcctcctggtccccgtggtgtgcaa
ggacctccaggtactcaaggaaggaaaggacaaatgggataccctggaagacatggagaa
aagggtgacccaggcttatctggtgcagtgggaccaccagggctccctgggactcctggt
tctgctggacagcatggggaaaaaggagagaggggtgatccaggaagagttagaataaaa
ggattaaaaggtgaaagaggacctgctgggcttccaggatttccaggccaaagaggtctt
gatggcagagatggggaattaggattaccaggggaaaaaggagctaagggtgattctgga
gtagcaattccaggtgagaaaggattccctgggctcccaggacctcctggggtaaaaggc
cagatgggattgcctggtttggggcttcctgggcttccaggagccagaggtagccccgga
gactttggtgatatgggtgatgttgggccacctggtccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggaaatccaggtcccccaggttttaaaggtgttcaa
ggacaaaagggtttaaaaggactccctgggcatcctggaccaaatggctttgatgggcaa
aaaggccatcgaggaaggccaggagcaggaatccctgggccagaaggctttagaggcaca
gctggtgatcctggtgatgaaggtgaaagaggagctacaattgatggcaaaaatggcctt
ccaggtccacctggcacagatggtcagaaaggcctcccaggtgacaccacatatggccct
ccaggaatcccaggcaacaggggactgccaggaccccctggtgctcagggagcaaggggc
aatccaggcattcctggacttcaaggacaacctggcaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatataggagcaccaggctgtccaggcttccctggctca
ccatgtgtcccaggcttaccaggaccacctggactcagaggtgtcatgggcctgccagga
cctcaaggcttgccgggctttaaaggtcagaggggagacaggggcctggctgggccacct
ggaatcaaaggtctcaaaggctctctgggctcacgaggtctcccaggtcctccaggcaca
cgaggtcccccaggacttccaggcagtaatggacccattggcttcccaggagaaacagga
agcaaaggcgttcagggaccccagggattcccaggacttccaggaatacaaggcccaatg
ggaatccttggtgtaaaaggtgaagaaggaaaaatgggtctacctgggcctagtggagaa
tgtggagatatgggaataaaaggtgaaagggggccaccaggagacagcggctgtgttaac
ctccgtcttgagaaaggacaaatgggggacccagggtttcctggtgagcatggattgaga
ggtgaaagaggtgaaaaaggtaatactggtttcagaggaacacgaggatttccagggaag
aacggtgttccaggactgccaggtgaccaaggagacactggagtgatggggtttccagga
tcacggggtttgcctggaccaaagggccttcaaggaattacaggttttcaaggagaacca
ggtgaccagggtgatactggcttaccaggaaacccaggatatccaggactgactggcccc
aaaggatgtaaaggcaagagaggtgacccaactcctctgcttggcacacatggtcagaaa
gggcctccgggagatccaggattgccaggactccgtggatttccaggggagaagggctta
ccaggtatccaaggacagcctggaagaccaggatccaagggtgaccctggatatccaggg
attcctggattaccaggagctacaggtcctcaaggattgccaggagaacctggagaaaaa
gggaaacctggaattttgggacctccaggattgcaagggttgcctggattccaaggcaga
aaaggtcttcctggactgcctggactggacggcttggatggactaaaaggtcaaaagggt
tctgcaggagctccaggtcagagtgagacagggcccccaggatactcaggagaaattgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccaggctcccctgga
gaaaggggattcccaggatttccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcttcccctggtcctccaggtgatcaaggattacctggttta
gacggcatcagaggtgatcctggaaatcctggtcctcctggagagactatctttgtgcgc
ggagatccaggtgataccggcattcgaggggcaccaggtaatcctgggccacgaggacaa
cagggagccaaaggccctccagggagccaaggaagagaaggcccaaagggtcctatgggg
gtccatggcccacagggtccacctggtgcttcaggacaaccaggagaccaaggttttcca
ggaagacctggtcccagaggtcccacaggtgaccctggtgaaccaggaaagatagatgat
tcatgccctacaatcccagggcctcctggggaagcagggcaaagaggagaggatggctct
gcaggattaccagggccaataggccaccctggaccccaaggcataaaaggtgaagaagga
tcgtgtggcctgccaggtcaagatgggttacctggggcacctggaccaccaggtgaccaa
gggagccgaggagagcaaggatatgctgggccacaaggtccacctggccagactggtgtt
ccaggacaaccaggcccccagattagatctgcaagtggattcttgcttgtccttcacagt
cagtcagacagagaaccactctgcccacaggggatgccaaagttatggactggctatagt
ctgctgtacctggaaggacaagagaaagcccataaccaagatcttggtctggcaggatcc
tgcctgcctgtgtttagtaccatgccatttgcctactgcaacatcaaccaggtgtgttac
tatgccagccgcaatgacaagtcctactggctgtccagcgctgctccgctgccgatggcg
ccgctgtccgaggaggagatccggccgtacatcagcagatgtgctgtgtgcgaggcccca
gcacaggcagtggcactgcacagccaggaccagtccattcctccctgcccattcaactgg
aggagcctttggataggatactcttttttgatgcacactggatctggtgaccagggtggt
ggacagtcccttatgtcgcccggaagctgcctggaagacttcagatcagcaccattcatt
gagtgccagggccagcggggaacgtgtcagttctttgctaatgaatacagtttctggctg
accaccgtgatgcctgagctgcagtttgcatcagcccccctgtcagggacgcttaaagaa
ggacaggagcagaggaaaaaaatcagtcgatgccaggtatgcctgaagcatggctaa
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integrated database retrieval system
