Pseudopodoces humilis (Tibetan ground-tit): 102102272
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Entry
102102272 CDS
T02921
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phi03021
]
102102272 (SETX)
Enzymes [BR:
phi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102102272 (SETX)
5.6.2.5 RNA 5'-3' helicase
102102272 (SETX)
Transcription machinery [BR:
phi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102102272 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
UvrD-helicase
Viral_helicase1
AAA_22
SLFN-g3_helicase
AAA_16
ResIII
nSTAND3
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
102102272
NCBI-ProteinID:
XP_014111769
LinkDB
All DBs
Position
Unknown
AA seq
2767 aa
AA seq
DB search
MSTCRWCTQSGADATEFLKHYAARRLSQEDFEGSNDDLSYCLECVVEYHKAREECPRLHE
DLWDLETSRLIAHMEKSMNEETGEDDELFLIDEHGETRLSGYVGPNFENNLRVPLLEILK
YPYLLLHKKVSELCVEVLCRMELSHDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWL
GICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKSEPESDYGDDMISCSQIVYN
YNTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDMRVHHSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHYLCSEIKDILIERIQQCDKISEFFLLILVSIVELHRSKKCLHLL
WISSQEWVEAVVRCATLPSRAFTRCSEKALGLCAKGSGAGSFQAPSSVQHACVQLIRSLL
KEGYQIGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQMCLKQVIRSIKGKALSTS
LVGGSSSNSTALPTGSIKHERNACDDGYKTSGHDREDLYSSFVTSKEGRDCPENPFHRRK
NAWEEECRDACRSSTSCTSTEGLLMNIKKEHDLTAQEFVFPQNSSATKVCGKVQENRNYD
LVPGKCNTDDQCFNSSTHPSDFRRGREFEMKHKAELKTPPYLCAQTHLDCPSSRNCKSLQ
ETSANSEFQSRLVPTKQASKEASLDSSNSSRNKPGVQGKEDDSTLLVGRNDTSLNKVSTE
EKSGSSLLSFFKRNTNVQTSNQEQPNLNDLDKYDCKNQFLETSCRDKIPAYGYFPFSSEN
KRIRPLSVKCESSDRLFEFSEYFKRENSSMGKKEEDFVKTVSKDDALSDPQVDRELSKLS
LAAYAKSVNFPVESNQESSVYHNVSEIKRKVKGSVRSSNEGQSTRCPSGADGPSNQVIVI
SDSSDEEKSMAEKEEIKTKNENVCAEPSSTSSSVSDSDIKRESKSPGSPMLLDDCDSQYF
EFETEAEVFSAWQDTQAYAVETTQEYKQDHVSPAAETSNSDDCLNNDLNDWGYDLYYFSD
DTMEEATSSIEKQTEDTSHQKEAGGTKEVTNSTLEESVGKEDAKGQLEKGADKGIAKGFT
LDSKLPEPTASTSPISLASKLALKKNSTSPQKPTAKCKSAPVVQRSPKKPPVVKTAKNKP
LQSMTERSQPGRSMPAVVPPRKVRQSPAPSSTVEKLGLKKGPRKAFDLSQPSLESLAQLR
SHGKAAGRIGVAQKKRTKQIEAQRLSVKRNKKLLICQDQKYPRQTRSKRSVKNPAGSSES
RNKVTKACAKPVEQKPQGFELAAIKESVQNQREKKREETACPSASERKFESLSVEEMASA
SKMPHSSDWNRKWEGNSVVVPPVPMDSSLSSTALGDDKDESSGKGCTVLPGGEMKTSRQN
GCKSDESSDEGDDNLFLTQLDPVDMELCSQEESVQDAVIGSKTPEEMDVDESLQQNEPSA
VVKCKDKDCMEQVEKPGEYCSKHPTTGPGADHVFAKPSLPPPKTRKPSTIKIFSSSSSSR
NAAFSKDLEDVRKLPPPSKNKVNAAKPVVVRPPLYPKPAPAGNPTCRSSSFSNVPQPLSS
SNVLQSQNRQYDNALNIYRERSQETYSSFLGAQQRDYSIFVNQVLKWTYEMFANFSLFGT
PNNLLQSIVASVPVQFQGYNEYFNTFFPLMMLNAFETLAQEWIENQKAREKSYCFYLQNF
SADMNTAHFTAHLRESDLARQLHPKEDDLILLVVHKEKDTFGEESGMDGHIVNHVGLVTR
FSRASGYANRQKEQQTACHLTVQTRGNLSFFIHKQVKCVVVGSLVTTHRKFKGLLLLSRS
PLAKPIINPSYNDFCPRDLPVASGSAASHMNEYNEDQKRAIETAYAMVKQHPGLPKICLI
HGPPGTGKSKTIVGLLSRVLRENTRNEKTARKKNSKIKPNRFLVCAPSNAAVDELMKKII
IAFKEKCQNKQEPLGNCGDIKLVRLGAEKSINSEVRGFSLDKQVEHRMKRKPGDCDQDIQ
KKKEALDQKLDMLSRERAMHKCEKRESQMLNDEIGRLAKERQQLASQLKEVRGHSQKVQA
DIILESDIICCTLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKL
VLVGDPKQLPPTVKSVKAQQYGYDQSLMARLQRHLEEQVQRNVLCSLPVVQLTVQYRMHP
DICLFPSNYVYGRTLKTAKAIEENRCSSEWPFQPYLIFDVADGREERDNDSYSNPREVKL
VMELIKTIKEKRKDLGLRRIGIITPYSAQKKKIQEQLDSVFKNNSPGEVDTVDAFQGREK
DCIIVSCVRANSSEGSTLAYVQANSTKGSIGFLASLQRLNVTITRARFSLFILGRLQTLM
EDKNWNHLIQDAQKRGAIIRTTEKNYKKEALRILKLRPPGQPPAKGGTMTSPVLQAGSSS
GKRSEPGNSGNSPQELAAGPGHAVPQGSRGPTQPAVAAAADSRRSSAPASVGAAAADSRR
GSAPASVGAAAADSRRGSAPASVGSAAADSRRGSAPASGGTAALAAITEKPRDPRLASLA
SRTEAKGTEQPSKDGPRSAQSNPGSTPQQGLDVSSAARDQICRTENAKKAQQTAGQCSLL
PTAPHTAQHECDWRAAVSKSGSKAPSEGGQSRSSEWNKDSRGLPRRPSQESPENTESSSA
KRRKIFP
NT seq
8304 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccgatggtgcacacagagtggtgctgacgccaccgagttcctgaagcac
tatgctgctcgcaggctttcccaggaagattttgaaggatccaatgatgacctctcttac
tgcctggagtgtgtggttgaatatcacaaagcaagggaagaatgtccaagactgcatgag
gacttgtgggacttggaaacttcccgcctcattgcccacatggagaaatccatgaatgaa
gaaacaggagaagatgatgagttgtttctgattgatgagcatggggagacacgtctgtct
ggttatgtgggcccaaattttgagaacaacctgcgagtgcccctgctggaaatactgaaa
tacccatatctgctgctgcacaagaaagtcagtgagctgtgtgtagaagtgctctgtaga
atggaactaagtcacgactcctttcaggtctttgagaaatacccaggaatttatctcttt
ttggtacacccaaatgaggtgattcgtcggtgggccatcctaacagcaaggaatttagga
aaggttgacagggatgattactatgacctagaggaagtgctgacttgtttgttcaaagtt
atcgagttggggctttttgagaatccagatatttacagctcttcaatgtttgaaaagggt
aaactcatccttctgccagctcatttgtatgatacagccaactacaaaaactattggctg
ggaatttgcatgttgctgtcagtgctggaagaacaagctatggactctttgttactgggc
ccagacaaacaaaatgattttatgcaatctatacttcacactatggagaaagaagcagct
gatgattccactgacccgttctggcctgctctgcactgtttcatggttattttggatcag
ctcggatctaaagtttggggtcagctgattgatcctgtccaagcctttcaaacaataatc
aacagtgtgagctacaacaatgaaatcaagaatattcgcagtagctttaggaggacaaaa
tctgaaccagagtcagactacggtgatgacatgatttcttgcagtcagattgtgtataat
tataacacagaaaagcctcaaaaggacactggctggaaggctgccatttgcccagagtac
tgccccaacatgtatgaagatatgcagaccctggctaacatgcttcagtctgacattggc
agagacatgcgtgtccatcacagcacattcctctggttcatcccttttgttcagtccctt
atggatctcaaggacttgggtgtagcctatatagtagaggtcatccactacctctgctca
gaaatcaaagatatcctcatcgaaagaatccagcagtgcgacaaaatctccgagttcttt
ctcctcatcttggtgtccattgttgagctacacagaagtaagaagtgcctgcatttgctg
tggatcagctcccaggagtgggtggaggcggtggtgaggtgtgccacgctcccaagcaga
gcgttcactcggtgcagcgagaaggcactggggctgtgtgcgaagggctcgggtgcaggg
tctttccaggcccccagctcagtgcagcatgcctgtgtgcagctcatccgcagcctgctc
aaggaggggtaccagatcggccagcatgccctgtgcaagcagtacctggacaaactcaac
ctcctcctgcggggaaatcgagctgtggggtggcagctgagcagccaggaaacccaggag
ctgcaaatgtgtttaaagcaagttataagaagtataaaaggcaaagcactgagcacctct
ttggttggaggaagcagttcaaactcaacagctttgccaactggctctataaagcatgag
aggaatgcgtgtgatgatggatacaagacaagtggacatgacagggaggacctttattca
tcatttgtcacgtcaaaggaaggcagagattgtccagagaaccctttccataggagaaag
aatgcctgggaagaggaatgtagagatgcatgtagaagttcaacatcttgcacatccaca
gaaggcctcttgatgaatattaaaaaggaacatgatttgacagctcaggagtttgtcttc
cctcagaactcttcagcaacaaaagtatgtgggaaagttcaggaaaataggaactatgat
cttgtgccagggaaatgcaatacggatgatcagtgcttcaattcaagcactcatccttca
gatttcaggagaggcagagagtttgaaatgaaacacaaagcagaactcaaaacaccacca
tatctgtgtgcacaaactcatcttgattgtccatcttcaaggaattgtaaaagtttgcaa
gagacaagtgctaacagtgagttccagtccagactggtccccactaaacaggcatccaag
gaagcatccctagattcctctaattcctctagaaataaacctggtgtgcaggggaaggaa
gatgacagtactttgcttgtagggcgtaatgacacctcactgaataaagtatcaacagaa
gaaaagtcaggttcatcgttgctgtctttctttaagagaaacactaacgtgcaaacttca
aaccaggagcagcctaatttaaatgatttggataaatatgattgcaaaaatcaatttttg
gagacctcttgtagggataaaatcccagcatatggttattttccatttagctctgaaaac
aagaggatcaggccactgtcagtgaagtgtgaatcaagtgacaggttgtttgagttttca
gaatatttcaagagggaaaacagttccatggggaagaaagaggaggattttgtgaagacg
gtttccaaagatgacgctttatcagacccccaggttgatagagaactcagtaaattatct
ttagctgcttatgccaaaagtgtcaattttcctgttgaatccaaccaggaaagctcagtg
taccacaatgtgtctgagattaaaaggaaagtgaaaggttctgtaagatcttccaatgaa
ggtcaaagtaccaggtgtcccagtggtgcagatggccctagcaatcaagtcattgtaatt
tcggactcttctgatgaagaaaaaagcatggctgagaaggaggaaataaaaaccaagaat
gagaacgtgtgtgcagagccatcttcaacttccagcagcgtttctgatagtgacattaag
agagaatcaaagtctccaggctctcccatgttactggatgactgtgattctcagtacttt
gaatttgaaacggaagctgaggttttttcggcttggcaagatactcaagcgtatgctgtg
gaaacaactcaggagtataaacaagatcatgtttcaccagcagctgagacaagtaattca
gatgactgcctgaacaatgacttaaatgactggggctatgatctgtattactttagtgat
gacactatggaagaagcaacaagctcaatagaaaagcagacagaagatacttctcatcag
aaagaagctggtggtacaaaagaagtgactaattcaaccttggaagagtcagttggcaag
gaagatgcaaaaggtcaactggagaaaggtgcagacaaaggtattgctaaaggattcacc
ctggactcaaaattgcctgaacccacagcatctacgtctcccatctcattagcttcaaag
ttggcccttaagaaaaatagcacaagcccacagaagcccacagcaaaatgtaaatcggca
ccggttgttcagagaagtcctaaaaaacctcccgttgttaaaacagccaaaaataaacca
ctccaaagcatgacagaacgttctcagcctggcaggtcaatgcctgctgtggttcctcca
aggaaggttcggcagagtcctgctccatcatcaactgtggaaaagcttggcctgaagaag
ggcccccgcaaggcattcgacttgtcccagccctccctggagagcctggctcagttgcgc
agccacggcaaagctgcaggcagaattggagttgcacagaagaagaggaccaaacagatc
gaggctcagcgtttgtctgtaaaacgtaataaaaaactgctcatctgccaagaccagaag
tatccaaggcagacaaggtccaaaagaagtgtgaaaaatcctgcaggaagttcggagagc
agaaacaaagttaccaaagcgtgtgcaaaacctgtggaacaaaagcctcaaggttttgaa
ctggcagctattaaagaatctgttcaaaaccaaagggagaaaaaaagagaagagactgct
tgtccttctgccagcgagagaaaatttgagagcctctctgtggaggagatggcaagtgcc
tctaaaatgcctcattcttcagactggaacagaaaatgggagggtaacagtgtggtggtt
cctcctgtccctatggattcaagtctctcttccactgcacttggagatgataaagatgag
tcttcaggaaaaggttgcactgtcctgcctgggggtgagatgaaaacatcgaggcaaaat
gggtgtaagtcagatgaaagcagtgacgaaggtgatgataatctgtttttaacccagtta
gatcctgtggacatggagttatgttctcaggaggaaagtgttcaagatgctgttataggt
agtaagactccagaggaaatggatgttgatgaaagccttcagcagaatgaaccctcagct
gttgtgaaatgtaaggacaaagactgtatggaacaggtggaaaagcctggagaatactgc
agtaaacacccaaccaccggcccaggggcagatcatgtgtttgccaagccttctctccca
ccacctaaaacaaggaagccttccactatcaaaattttcagctcatcaagttcttcacgg
aatgcagccttcagcaaagatcttgaagatgtcagaaagttgcccccaccttcaaaaaac
aaagtgaacgcggccaaaccagtggtggtcaggccaccactgtatccaaaaccagcacca
gcaggaaatccaacatgcagatcttcaagtttcagtaatgtacctcaaccccttagttcc
agtaatgttctccagtcacaaaatagacagtatgacaatgctttaaatatttacagagag
cgtagccaagaaacctattcctcttttcttggcgctcagcagcgcgattacagcattttt
gttaaccaagtcctaaagtggacttatgaaatgtttgcgaacttcagcctctttggaact
ccgaataatcttctgcagtccatagtagcctctgttcctgtccaatttcaaggctacaat
gaatattttaatacattttttcctttgatgatgctcaacgcttttgaaacactggcacaa
gagtggatagaaaatcaaaaagcgagagagaaaagttactgcttctacttacagaacttt
tctgctgacatgaatacagcacattttacagctcatctacgagagagtgatttggcaagg
cagcttcatccgaaggaggatgacttaatccttttggtggtccacaaagagaaggacact
tttggggaagaaagtgggatggacggccacatagtgaatcatgttggccttgtgacacga
ttttctcgtgcatctggctacgcaaatagacaaaaagagcagcaaactgcctgtcatctt
actgtgcaaacccgaggcaatttgtcattcttcatccataagcaagtgaagtgtgtggtg
gttggctccctggtgaccacacacagaaagttcaaaggtttgctgctgctgagcaggagc
cccctggctaaacccatcataaatccaagttacaatgacttctgtcccagagatctgcct
gttgcctcaggaagtgctgcttcacatatgaatgaatacaatgaagaccagaagagagcc
attgagacagcttatgccatggtaaaacaacacccaggacttcccaagatttgccttatc
catggaccacctgggacaggaaagtcaaaaactattgtaggactcctgtcccgtgttttg
agagaaaacactaggaatgagaaaacagctcggaaaaaaaattccaagattaagccaaac
cgttttctagtttgtgcaccatcaaatgctgctgttgatgaactcatgaaaaagatcatc
attgcatttaaggaaaaatgccaaaacaaacaggagcctttgggaaattgtggtgatatc
aaattagtgcgacttggtgctgaaaaatcaatcaacagtgaggtccggggattcagcctg
gataagcaggttgaacacagaatgaaacgaaagccgggtgactgtgaccaggacattcag
aagaagaaggaagctctggaccagaagctggacatgctctctcgagagcgtgccatgcac
aaatgtgagaagagagagagtcaaatgttaaatgatgaaattggcagacttgcaaaggag
aggcaacaactcgcttctcagctaaaggaggttcgggggcactcccagaaagtgcaggca
gacatcatcctggagtctgacatcatctgctgcacactgagcaccagcggggggagcctg
ctggaatctgctttctcccggcaggggcttgaccccttcagctgtgtcatcgtggatgag
gcagggcagtcctgcgaggtggagacactgattccactgatccatcgctgtaataaactt
gtcctcgttggagatcccaaacagctccctcctactgtcaaatctgtaaaagctcagcag
tatggctacgaccagtctctgatggcccgtctgcagaggcacctggaggagcaagtgcag
aggaatgtgctgtgcagcctgcctgtggtgcagctgactgtgcagtacaggatgcaccca
gatatctgcctcttcccatccaactatgtttatggcaggactctaaaaactgccaaggca
atagaggagaacagatgttcttcagagtggccattccagccctacctgatttttgatgta
gctgatggtcgtgaggagcgagacaatgactcttacagcaatcctcgggaagtgaaactg
gtgatggagttaattaaaacaattaaagaaaaaaggaaggatctgggccttcgtcgcatt
ggaataattaccccttacagtgcacagaaaaagaaaattcaggaacaactggacagtgtg
ttcaagaataacagcccaggagaagtggacacagtggatgcattccagggccgagagaag
gattgcatcatcgtgtcctgtgtgcgggctaacagctccgagggctccactctggcatat
gtgcaggcaaacagcaccaaaggatccattgggtttctggcgagcctccaacgactgaat
gtcaccatcacccgagcccggttcagcctcttcatcctgggccggctgcagacactcatg
gaagataaaaactggaatcacttgattcaggatgctcagaaaagaggtgccattattagg
acaacagaaaaaaattacaagaaagaggctctgaggattttgaagctcaggccaccagga
cagcccccagccaaaggagggacgatgacatctcctgtgctgcaggctggttcttccagt
ggcaagaggagtgagcctggaaattctgggaacagcccacaggaacttgctgctggccct
ggccatgcagtgccccaaggaagccgagggcccacacagcctgcagtggctgcagctgca
gattccaggaggagcagtgcccctgcatctgtgggggctgcagctgcagattccaggagg
ggcagtgcccctgcatctgtgggggctgcagctgcagattccaggaggggcagtgcccct
gcatctgtggggtctgcagctgcagattccaggaggggcagtgcccctgcatccgggggg
actgcagcacttgctgccattacagagaaaccacgggacccaaggctggcaagcctggcc
agtcgaactgaagccaaaggcacggagcagccctcgaaagatggccctcggtcagcccag
agtaatccaggatcaacaccacagcaaggcctggatgtgtcctcagctgccagggatcag
atttgcagaacagaaaatgccaagaaggcccagcaaacagcaggacagtgcagtttgctt
cccacagcccctcacacagctcagcacgagtgtgactggagagcagctgtgtccaaaagc
ggttccaaagctcccagtgaaggaggtcagagcagaagcagtgagtggaacaaagactct
cgtggtttaccaaggagaccatcccaggaatcaccagagaacacagaatcaagctctgcc
aagagaagaaagatttttccctga
DBGET
integrated database retrieval system
