Pseudopodoces humilis (Tibetan ground-tit): 102102726
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Entry
102102726 CDS
T02921
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102102726 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phi03021
]
102102726 (PCF11)
03019 Messenger RNA biogenesis [BR:
phi03019
]
102102726 (PCF11)
Transcription machinery [BR:
phi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102102726 (PCF11)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102102726 (PCF11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
102102726
NCBI-ProteinID:
XP_014104682
LinkDB
All DBs
Position
Unknown
AA seq
1700 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQHVSPTPHMTVKPPHQAAVQSEKIKPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSLTSQSETKGNKTAQAEKQNSTKSEKSKSSEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDNKSQECESTKVSDISKRDPRLKRHLQDKSEGKDEEVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDMTTEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKTGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEES
KNSQQNDEHQALVKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQTKAKRGVQFD
RKEPFAERSRRHSPVSGTTRPFAENLSPLESRRRLEEQRATKGARGSDPYDSWGESDEFR
DALRQQGKSTAEFQKIDGDALCRFDSREERQLLGQAGVREEPRSPFTERFKRARYEDPEK
APFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAAGSSS
RIDGPAGQAAMRFEGPLVGTGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPVGPHGQLGGGLRFEGPHGQPM
GPHGPSSGGLRFEGPHGPSGGGLRLEGSRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAG
PRFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQAQARFDTAIPQRFDGPHQPA
SRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFD
GSPGPNFNGPGGPGAQNFPLRAAGHYFEEKGLQGPQYGNFSNMPMGGNQVSLMSAQPGPY
GQGQQYLPNPGNFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSASAQA
NETSAQPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTS
QTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAH
EEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKI
YHPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESSDSPKIKEEPDDTPPA
CAEESTPASTEIKTEPEESV
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattgcgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
cttgagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcag
ggatcatctagtatagcttcagttccagcaccttccaagcaacacgtgtctcccacacct
catatgacagttaaaccacctcatcaggctgctgtgcaatctgaaaaaatcaaaccatcc
ccaagtcctccacttcatgacatcaaaatagtgaacagggatcctcggcttaataggatg
ggtcaacattcttctcatactaaagatcaatctcataggaaagaattttctccaagtctg
accagtcagtctgagaccaagggaaacaaaacagcacaggctgaaaaacagaactcaaca
aagtcagaaaaatcaaaatcaagtgaaaaaacacaaaagaaagaacttgaacagtccaaa
gcaaaatctaaatcgccatcccctttgaaaaataagctgcctgatactaaagacaataaa
agccaggaatgtgaaagcactaaggtttctgacatcagtaagcgggatccaagactgaaa
agacatcttcaagataagtcagaggggaaggacgaggaggtcaaagaaaagaggagaagt
acagagaagaaggaaaaagaggagcataagacatgtgaacatagaccggtggggagcaga
aataaagtaattaatggtgctgttcagaaacaagacatgacgacagaggagtcagaaaaa
cagggtggaaaacaaggaagatcaagtagtagaaagcggtcacggtcacgctctcctaag
gcaagatcaccctctacacattctccaaaaagacgagagaggagatcacctaaaagaaga
cttcggagtctatctcccacttcatcaactcctaaaactggaaagatacgtcaaataggc
cctaagcagtctcatgttgaagaaggcacacaagcagcaagagacgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagcccaagaagaa
agaccccaagagacagccacccagcattctgcaaaagcttctccagatccaaaggaaaac
gcagaaaactggcagggatccaaatcaggcaagaggtggaaatctggttgggaagaaagt
aaaaactcacagcagaatgatgaacaccaagcacttgttaaatcccctcaccaaagacat
cgggaaaactggcctgctggtaaaggaattctttcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagtaaaaga
gaattacttaagaaggctaatgaccgcttaacatctggtgaaataacacaggatgagttt
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggcttgaaaaagaaacctcttctatcg
gatgcagaattaacatattatgaacataaagctaagctaaaaaggacacaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacctgat
gcattgctttctggaatagaatgtgagcagacaaaagccaagcggggggtacagtttgac
agaaaagaaccatttgcagaaagatcaaggagacactctcctgtaagtggcactacaaga
ccttttgctgaaaacctctcaccccttgagagtcgacgcagacttgaagaacagcgtgct
actaaaggagcaagaggttctgatccttatgacagctggggagaatcggatgaatttaga
gatgctctcagacaacaggggaaaagtacagcagagttccaaaaaatagatggggatgca
ctttgtagatttgatagtcgtgaagaaagacagcttcttgggcaagctggtgttcgagag
gaaccaaggtcaccattcactgaacgtttcaaaagagctaggtatgaggatccagagaaa
gcaccatttccagaaagtccaggatcaagatttggaggtattgaagcaaagcagaggata
agtgcactgatggaagacagacctctatttgatggctcacctagaccaactgctgcaagg
gttggggtagatggacaaggaagtccttttgttgatggtcctgctgctggttcaagttcc
agaattgatgggccagctggacaagctgctatgagatttgaggggcctttggtggggaca
ggtgcatctcagtttgatggaccactggcaggagcagggggagctggagccctgagattt
gatgggccaccaggacagctggcaggggccctgagatttgaaggacccccaggtcaggtt
ggtggaggaggtccgctgcggtttgagggacctcttgggcctttgcggtttgaggggcct
gcagggcagcctgtaggtggtcctagatttgaaggccctggagttggtctcaggtttgag
ggtcctcatggtcagccttcaggtggtctcaggtttgaggggcctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcaacccctg
gggcctcatggtcaaccagggggtggcctcaggtttgaggggccacatttacagccggtg
gggccccatggacaacttggaggtggcctcagatttgaggggccacatggtcagcccatg
gggccacatggaccatcaagtggtgggctcagatttgaggggccacatggaccatcgggt
ggtggactgagattggaaggatcacgtggtcagccgggtctaggtcctaggttgattgat
ggaccggtacaccagggagctggtggacttagatttgatggtcctcttggtcgggctggt
ccaagatttgatggctgtcatggagctggatttgatggtcagccaggacagctttctctc
ctgcaaagatttgatggaattcatggacagcctggtccaaggttggcacctggtcagcag
gcacaagcaagatttgacacagccatacctcaaagatttgatggacctcaccagccagcc
tctaggtttgacttgccccttggccttcagggtgcacgttttgaaaatgtagctaaccat
cctgcctcaagactagaaatgtcaccatatggacaaggtggtccgtttgttgaacatcct
ggccagggctacaatggtccagctcatggaatgcagttccagagacctgatatatttgat
ggttcgcctggaccaaatttcaatgggccaggtggcccaggagcccagaacttcccactg
agagcagctggacattactttgaagaaaaaggtctccagggtcctcaatatggaaatttc
agtaatatgccaatgggaggtaatcaggtttctctcatgtccgctcaaccaggaccttat
ggtcaaggtcagcagtatttaccaaatcctggaaattttgtccagaaccctgcaggagcc
ctttcccattcgtatcccgataaccaccttggacaggttgatgtgaatgaattgtttgct
aaactgctgaaaacagggatactcaaattgtctaaaactgattccgcttcagcacaagca
aacgaaacatcggcccagccaactgctgaagaagaagatgatgatcagaatgaagatcaa
aatgttccagacctcactaacttcatagttgaagaacttagacagcgttatgatagtgtt
ataaatcggctgtacactggaattcagtgttactcctgtggaatgagattcactacttca
cagacggatgtttatgcagatcatttagactggcattatcgccagaaccggacagaaaaa
gatgttagcagaaaaattacacacaggagatggtactacagtttaacagactggattgaa
tttgaagaaatagcagatctagaggagcgtgctaaaagccagttctttgaaaaagctcat
gaagaggttgtgttgaagacgcaggaagctgcgaaagagaaggagtttcagagtgtccca
gctgggccagctggtgcagttgagagctgtgaaatttgccaggaacaatttgaacagtat
tgggatgaggaagaggaagagtggcacttgaagaatgccatcagggtagatgaaaagatt
taccatccatcttgttatgaagattaccagaatacatcatcatttgattgcacaccatct
cccagcaagactccttcagaaaatccactaaatataatgttggacattgttaaacaagaa
acagaggagtcctctgactcacctaaaatcaaagaagaacctgatgacacccctcctgcc
tgtgcagaagagagcacacctgcatctacagaaatcaaaacagaacctgaggagtctgtt
taa
DBGET
integrated database retrieval system
