Pseudopodoces humilis (Tibetan ground-tit): 102102861
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Entry
102102861 CDS
T02921
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phi03036
]
102102861 (DICER1)
Chromosome and associated proteins [BR:
phi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102102861 (DICER1)
microRNA pathway
RISC loading complex
102102861 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
DEAD
ResIII
Helicase_C
Cas3-like_C_2
Amidoligase_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
102102861
NCBI-ProteinID:
XP_005520216
LinkDB
All DBs
Position
Unknown
AA seq
1921 aa
AA seq
DB search
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSSLEVTESWTKEKWSQEFSKYQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLA
IQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLMELDEALAFLNDCNISVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRSKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDANETE
TEPIVDDDDVFPPYVLRPDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
HTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDI
EKSEARTGIPNTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISLPNSSVVENENYCKHSTIVVPENAAHQGANR
TSSAENHDQMSVSYRTLLNESPSKLQIDVSVELATINGVSYNKNVANGNCDLVNRDFCQG
NQLNYCRQEIPVQPTTSYPIQNLYNSENQPKPSNECTLPSNKYLDGNANRSTSDGCPIVA
VTTSTSKAINLSKDRADSEKSPCSGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYIVNQDKSNTDKWEKDEMTKENMLANGKLDDYNDDEENEDLMWRLPKEETDFEDD
FLEYDQEHIKFIDNMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSMGNVQCSSDFDDF
DYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIAD
CVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWEGTLCATTENCNSEQKNHSPNS
VSASVANSEPSLCKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKA
YLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN
NTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEED
IEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEME
PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPN
S
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgct
tcctccccaatgggtcctttttttggactaccatggcaacaagaagcaattcatgataac
atttacacaccaagaaaatatcaggttgaactgcttgaagcagctttggatcataataca
atagtctgcttaaacactggctcagggaagacttttattgcagtactactcactaaagag
ctgtcctatcagatcaggggagatttcaacaaaaatggaaaaagaactgtgttcttggtc
aactcagcaaatcaagttgctcagcaagtgtcagctgtcaggacacattcagaccttaaa
gtgggagagtattcaagtttggaggtaactgaatcatggacaaaagagaagtggagtcaa
gaattctctaagtatcaggttctggttatgacgtgtcatgttgctttgaccgttttgcga
aatgagtatttatccctgtcaaatattaatcttctggtgtttgatgagtgccatcttgca
atccaggatcatccataccgtgaaattatgaagatctgtgaggattatccatcatgtcct
cgaattttgggattaacagcttccattttaaatgggaaatgtgatcctgctgagttagag
gagaagatccagaaactggagaaaattttgaagagcaatgctgaaactgcaactgatttg
gtggtcttagacagatatacttctcagccatgtgagattgttgtagactgtggaccatat
actgacaaaagtgggttgtatggaagattattaatggaattggatgaagcacttgctttt
ctaaatgactgcaacatatctgtacattcaaaagaaagagattctaccttaatttctaag
cagatattgtcagactgtcgagctgtgttggttgttctgggaccgtggtgtgcagataag
gtagctgggatgatggtgagagagctgcagaagtatatcaaacatgaacaagaggagctg
cacaggaaatttttattgtttacagacactttcctaaggaaaatacatgcactctgtgaa
gagcacttctcgcctgcctcacttgacctgaaatttgtgaccccaaaagtaataaagctg
cttgaaatcttgcgcaaatacaaaccatatgaacggcagcagtttgaaagtgttgaatgg
tataacaataggaatcaggataattacgtatcttggagtgattctgaagatgatgatgag
gatgaagaaattgaggagaaagagaagccagagactaatttcccatctccctttactaat
attttatgtggaattatttttgtggaaagaagatacacagcagttgttctaaataggttg
ataaaagaagctggcaagcaagatccagaactggcttacatcagtagcaattttataact
ggacatggcattggcaagaaccagcctcgtagcaagcagatggaagtagaatttagaaaa
caggaagaggttcttagaaaatttcgagcacacgagaccaacctacttattgctacaagt
attgtagaagagggtgttgacataccaaaatgcaacttggtggtgcgttttgatttgccc
acagaataccgttcctatgtgcagtcaaaaggaagagctagagcaccaatttccaattac
attatgttagcagatacagacaaaatcaaaagttttgaagaagatcttaagacatacaaa
gccattgagaagatcctccgaaacaaatgctcgaaatctgttgatgccaatgaaactgaa
actgaacccattgttgatgatgatgatgtctttccaccctatgtattgaggccagatgag
aacagtccaagggttactattaacactgctattggacacataaataggtactgcgctaga
ttaccaagtgatccatttacacacctggctcccaagtgtaaaacccgggaactgcctgac
catacattttactctactctctacctgccaatcaactcacctcttcgagcttcaattgtt
ggccctccaatgagttgtgcaagactggctgagagagttgttgctcttatttgctgtgaa
aaactgcacaaaattggtgaactggatgatcatttgatgccagttggtaaagaaacggtt
aaatatgaggaggaacttgatttacatgatgaagaagaaaccagtgttccaggaaggcca
ggctctaccaaacgaagacagtgctatcctaaggctattccagagtgtttgagggatagt
tatcccaaacctgatcagccctgttacttgtatgtaataggaatggtgttaacaactcct
ctacctgatgagctcaacttcaggagacgaaagctgtatcctcccgaggatacaacaaga
tgttttggcatattgacagccaaacctatacctcaaattcctcactttcctgtgtatact
cgctctggagaggttacaatatccattgagcttaagaaatctggttttactctgtctctg
caaatgcttgagctgattacacgactccaccagtacattttttcacatattcttcgtctt
gagaaacctgcactagagttcaaacctacagaagctgattcagcctattgtgttctacct
ctaaatgttgttgatgactccagcactttggacattgactttaagtttatggaagacatt
gagaaatctgaggcacgtacaggcattcccaatacacagtatacaaaagaaatgcctttt
attttcaagttagaagattaccaggatgccgttatcattccacgatatcgaaattttgat
cagcctcatcgattctacgtagctgatgtatacactgatcttactccactcagtaaattc
ccttcccctgaatatgaaacttttgctgagtattataaaacaaagtataatcttgacctt
actaatcttaaccagccactgctggatgtggaccacacatcttcaagacttaatcttttg
actcctcgccatttgaatcagaagggaaaagcacttccactgagcagtgctgagaagagg
aaagcaaaatgggaaagtttgcagaataaacagatactggttcctgagctctgtgctata
catcctattccagcatcattgtggagaaaagcagtttgcctccccagcatactttaccgc
ctacactgccttttgacagcagaggaactgagagctcaaacagccactgatgctggtgta
ggggttaaatcacttcctgcagatttcagatatcctaacttggactttggatggaaaaag
tctattgacagcaagtccttcatctctcttcctaactcctctgtagtagagaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaataga
acctcttctgcagaaaaccatgaccaaatgtctgtgagttacagaacattgcttaatgag
tcacccagtaaactccaaattgatgtctcggtagaacttgcaacaattaatggtgtttct
tataataaaaatgttgccaatggcaattgtgatttagttaacagagacttttgccaagga
aatcagctgaattactgcaggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaacagtgagaaccagcccaagcccagcaatgaatgtactctaccgagt
aataaataccttgatggaaatgctaacagatctacctcagatggatgccccatagtggca
gtgaccaccagtacttcaaaagctattaatctttcaaaagacagagcagattctgaaaag
agcccttgcagtgggtactcctcaaaaactctcggtcctaatcccggtctcattcttcaa
gctttgactctttcaaatgctagtgatggattcaacctggagcggctagagatgcttggt
gattcatttttaaagcatgccatcactacatacttgttttgcacttaccctgatgctcac
gagggacggctgtcatacatgagaagcaaaaaagtcagcaactgtaacttgtatcgcctt
ggaaaaaagaaaggactgccaagtcgcatggtggtgtcgatttttgatcccccagtcaat
tggcttcctcctggttacatagtaaatcaggacaagagcaacactgacaaatgggagaaa
gatgaaatgacaaaggaaaacatgttggctaatggtaaacttgatgattataatgatgat
gaagagaatgaagacctaatgtggaggttgcccaaggaggaaacagactttgaagacgat
tttctggagtatgatcaggagcatattaaattcatcgataatatgttaatgggatcaggg
gcttttgtgaagaaaatttcactctcacacttttcaaccactgattcaaactatgaatgg
aaagcacccaaaaagtcatccatgggtaatgttcagtgttcatcagattttgatgatttt
gactatagctcttgggatgctatgtgctatctggatcctagcaaggctgttgaagaggat
gattttgtagtgggcttctggaatccatcagaggaaaactgcggtgttgatgcaggaaaa
cagtcgatctcctatgacttgcatacagagcagtgtattgctgacaagagcattgcagac
tgtgtggaagccctgttgggctgctatctgaccagttgtggtgaaagagctgctcagctt
ttcctgtgttccttggggctgaaggtgctccctgtaattaaaaagactgattgggaaggc
actctctgtgctaccacagagaactgtaacagtgagcagaaaaatcattcaccaaattct
gtttctgcttctgtagctaattcagagccttctctgtgtaaagacctggagtatggctgt
ttgaagattccaccaaggtgtatgtttgatcacccagatgctgaaaaaaccctaaatcac
cttatttctggttttgaaaactttgagaagaaaataaattacagttttaagaacaaggct
tatcttcttcaggcatttactcatgcctcttaccattataataccattactgattgttac
cagcgcttagaattcctgggagatgcaattttggactacctcataaccaagcacctttat
gaagacccacggcaacactctccaggagttcttactgacctacgatctgctctagtcaat
aataccatttttgcatcattagctgtaaagtatgactaccacaagtacttcaaagctgtc
tctcctgaactgtttcatgttattgatgactttgtgcagtttcaaatggaaaagaatgaa
atgcaaggaatggattctgagctcagaagatctgaagaagatgaagaaaaagaggaagac
attgaagtaccaaaggccatgggggatatatttgagtcccttgctggtgccatttatatg
gatagtggaatgtctttggaaatggtttggcaagtgtactatccaatgatgaggccacta
atagaaaaattttctgcgaatgtgccccgttccccagtgcgagagctgctggaaatggag
ccagagacagccaaatttagtcccgcggaaagaacttacgatggaaaggtcagagttaca
gtggaagttgtaggaaagggaaagtttaaaggtgttggcagaagctacaggattgccaaa
tctgcagctgcgagaagagcactacgaagcctcaaagcaaatcaacctcaggtcccaaac
agctga
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