Pseudopodoces humilis (Tibetan ground-tit): 102103487
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Entry
102103487 CDS
T02921
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phi04131
]
102103487 (VPS13A)
Membrane trafficking [BR:
phi04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
102103487 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Spo16_N
Motif
Other DBs
NCBI-GeneID:
102103487
NCBI-ProteinID:
XP_005522703
LinkDB
All DBs
Position
Unknown
AA seq
3195 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSRLDVPFKVKAG
HISQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEARQFLEARQRELQRIEE
AKQKIADQDKVKEEKQDTFVEKLVTQVIKNLQLKISNIHIRYEDDITNHDNPLSFGISLQ
NLSLQTSDKNWNPCLHDETAKLFHKLVRLDNLFAYWNVKSEMFYHGGCDESLVNLKQGVA
SHNVIPDGYDFVFRPISAKAKLLMNPRSDVDFSSPKIDLDVNLQDITVEFNKPQYFSVVE
LLESIDMMTRNLPYRRYRPDVPVHNNAKTWWKYVIYGILEVNVQPKLQMWSWEHISHHRK
QVKNYKEMYKTKITSKKPNEEILKSLEEFEKTLDIFNITLARQQAEVEATKAGLKIYRPG
VKQDDENSGGWFSWIWSWSGEKKDEQSQETKGSSLEELMTQEEKAKLYAAIGYSETAVDP
TLPKSYEAMKFSVNLLSMSISIRENKQTPTLIEIALADLSTVFTQRPGAQAIRFETKINS
LEVTGVSQEKCTPRLLSSRTVYSDESTSLLSIMFETNPLDEKADQRIRIESQPLEIVYDA
VTVNSLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYIIETQKVLDLKINLMASY
IIVPQKGFYDHTSNLLLLDLGSFKMRSKSRSDLSEIKVGQTSIEDIMSRAYDSFDVQLSS
MQLLYSKHDENWREARKLKNSSQCILQPLDVKLEFSRAMVVTDARMPRFKLSGQLPLLSI
QISDQKVTSILELIDSIPKPESAPATSSPPKMTEGVLSPVLSAPHLSQNMCPVLDLHSFA
ESESEEEFYDALSSPVEDVPFFEVPSGSLKQAISTRRKTLRKQESLKNMTDFQLKFEVAE
VLIKLCRLTGDTEMPVLQLDILGLGTEIKIRTFDMTGNAFLREVGLLCPEYIDDNDKPVY
IITTLDNVEDDLLTLEYIKTDIKGPELKTACQNVLQKIKVNFSSLDVHLHTEALLNAINY
LNNLLPKQGTKVAEEPVHEKTEEKKDVLKKLTSKKSKCEDVIDLIICADLSCLRIFIREK
SHRIAEIHIEGLDSQVIMKKAATDVTAKLKNIIIVDSDETALYKKALYITEKEVFNFRMV
SYVNATDGIAYTNMDVVDNRIYLTVGCIQVVFVNKFVSSILAFINNFQAAKEALTEATVR
TAEKAATGVKELAERSSRLALDINIKAPVVIIPQSAMSANVLVADLGLITVKNRFFIAKT
KARYTLPPVIDSMTVKLSELKLYRSYYEQGSLQTEVQLLQPVNLEVAVERNLAAAWYNEV
PDIEISGRLKPMNLILSQEDITTILRTLNENAGESSGASTALPESKAPTSHSSETHGTSQ
QSAGVTVVTSAVVELHSPMKIKTTLKLDFRFDSLTLVLYSPNSKQVNSLDQRDDLLKLAE
FKLVLMSAALKMLSDGSMNASVKLANCTLDDKRQSIQKATPRMVEMKHGFEKKVMVDVNY
KQGRDGTVLDVIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLKQSLPSKDQASVQP
VSTMEVNIVVKNPEIVFVADLTRSDAPALVVTTQCEVFIKSSPERYSMTAAVREIQMKAC
PFLPEERKGNITTVLQPCDFFFEMKQSGTNPQTADLTIKSLTIEVSPIIINTVITITSAL
YQTTEATKEEISQIPPDLWNKKDIKNLKMWFLEETNENEDKNPNTELVPTGESLKINIES
VFLTLEAGVGHRTVPMLLAKSSFTGEVKNWSTLINLHSRLELEVHYFNEMFGVWEPLLEP
LEVEKTDLFKPWTLEIKMKKAKKALFESDDEEEENYKVPEYKTVINVSSKDQLNITLSKL
GLQMLSNLGTAFAEAASQTSDIFKKDRAPFVVINSLGVPITVSPSDSFSVLNVEFGAKIF
HLEDKESLNMEFVRTRNESDQFTAMTTLCSKRFYIQICPHNHSAVEKIPLTKVGRCIYKV
RHEESGVERSIVSQIDTVEGSKMITIRSPVQIRNHFSIPLNVFEEGRCLGTASPANEFNI
PFSSYRSILSLQPLASENGVGGEYDMCEGITFDEIMKNVDGLLQRKCQSVRSTNHSLIIN
IVPVKDSLTTSLSAEDEWDFPYVVHLWPSVLLRNLLPYQITYSVEGNGNKYDTLQEGCSA
QIHNAVLDQTKLDLQLLNYLDQNWRSEYQIKSNLPDISFTTFHCVTELDKTELDIAVHVT
YTTGQMIIAIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFRQNNKVQL
RVTDSELSDQFSLDTVGSHGSVKCKSHKKEYQVGVTINNSSFNITRIVTFTPFFMISNRS
KYTLEVAEEGKEKWIPIVLQQCIPFWPENDANKLLVRVENSDLPPKKINFDQQESCLLLH
LDNKLGGIAVDVNLTEHSTVITFSNYHDGAAPFLLINHTKEEIIEYGQSSLGELEDCLQP
DKAVLYTWADPTGSRKLKWRCGNRTEEISPKEDKMEIISVDSRKAVYLMSFYEGLQRIVL
ITEDENVFKLTYESVKAELAEQEIVLSLQDVGISLVNNYTKQEVSYIGITSSDVVWETKP
KKKSRWRPMSVKQIDKLEQEFRDYNELSPSENKIIELESNVLVCLTPNGVNMKIQQPNEI
PIRRNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYPIKPPKSITLDSAP
KPFTDVSIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLYAIGEFFTQTDVPSDQELQL
FKKDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGEDSNKEERKNELIP
FQSLNLLLKSIGATLTDVQDIVFKLAFFELRYHFCTTQQLQSAVVRHYSKQAIKQMYILI
LGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGFKALVGGAVGGLAGA
ASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGLVSGFVSGITGIVT
KPIRGAQEEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKVADSSEDVISLRPP
RFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDLLMVTKSGVLFVTK
GAFGQLTCEWQYTYDEFTKEPFIIDGRRLRIEAKERVKSVFHAKEFGKIINFRSPEDAKW
ILSKLEEVRENQPKL
NT seq
9588 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgaatccctggtcgtggacgtcctgaatcgtttccttggagactacgtggtg
aacctggacagctcccagctgaagctgggcatctggggaggagctgtagcactgaagaat
ctggaaataaaagaaaatgcactgagccgtttggatgtgccatttaaagttaaagcagga
catattagtcaacttaacctacagataccatggcaaaacctttatactcaacctgttgaa
gcagtccttgatggagtttatttgctcattgtgcctacagccagcataaaatatgatgct
gagaaagaagccaggcagttcttggaagcaagacaaagggaattgcagagaatagaggaa
gcaaagcagaagatagctgaccaagataaagtgaaagaagagaaacaagacacttttgta
gaaaagctagttactcaggtcattaaaaatcttcagctgaaaatttccaacatccatatt
cgctatgaagatgatatcacaaatcatgataaccccttgtcatttgggatttcacttcaa
aacttaagtttgcagacctcagataagaattggaatccatgtttacatgatgaaactgcc
aaattgttccacaagcttgtgcgactggataacctttttgcttattggaatgtgaaatca
gagatgttctaccacggtggttgtgatgagtcattggttaatttaaaacagggagttgcc
agccacaacgtgattccagatggttatgattttgtattccgcccaatttcagctaaagcc
aaactccttatgaatcctcgatctgatgttgacttttcatcaccgaaaatagatttagat
gtaaacttacaggatataactgttgaattcaataaaccacagtacttcagtgttgtggag
cttcttgagtctattgatatgatgactcgaaatctgccatatagaaggtacagacctgat
gttccagtgcataacaacgccaagacatggtggaaatacgttatttatggcatccttgaa
gtaaatgttcaacctaagctccaaatgtggtcatgggaacatatttcacatcataggaag
caagtgaagaactataaagagatgtataaaacaaagataacgtcaaaaaaacctaatgaa
gaaatcttaaaatcattggaggaattcgaaaagaccttggatatttttaacatcactcta
gcaaggcaacaagcagaagttgaggcaactaaagctggattgaaaatctacagaccagga
gtaaaacaagatgatgaaaattctggtggctggtttagctggatatggagctggtcaggt
gaaaaaaaggatgaacagagccaagaaacaaagggttcaagtcttgaagaactgatgaca
caggaagagaaggctaaactttatgcagcaattggatatagtgaaacagctgtggatcca
actcttccaaaatcatatgaagccatgaagttctctgtgaacttactaagcatgtcgata
tcaataagagaaaacaagcaaactcctacactaatagaaattgcattagctgacttgagt
acagtatttacccaacgaccaggtgcacaagcaataaggtttgaaacaaaaattaactca
cttgaagttacaggtgtatctcaagaaaagtgtacaccccgtctcctctcttctcgaact
gtctattcggatgagagtacttcacttttaagcataatgtttgagactaatcctttggat
gagaaagcagatcagaggattaggatagaatcacaaccactggaaatagtgtatgatgca
gtgacagtaaatagcttagtggatttcttcaggcctcctaaagatgtacatttagagcaa
ttgacatcagcaactctgatgaaacttgaagaattccgtgaaaaaacatcaacaggtttg
ttgtatattattgaaacccagaaagttcttgacctcaaaataaacctcatggcatcatac
attattgttccacaaaaaggattctatgatcatacatcaaatttactacttctggatctt
ggtagttttaaaatgagaagcaaaagtcgttctgatttatcagaaatcaaagtaggacaa
acctctattgaagatataatgtcaagagcttatgacagttttgatgtccagctcagcagt
atgcagttactgtacagcaaacatgatgagaactggcgagaagctcggaagctaaaaaat
tcatctcagtgtatcttgcagcccttggatgtaaaactggaatttagcagggctatggtt
gttacagatgcaagaatgcccaggttcaaactgtcaggacagttgcccttactctctatc
caaatatcagaccagaaggtgacaagtatcttggagctaattgatagtattcccaagcca
gaaagtgctcctgctaccagttctcctccaaaaatgaccgagggtgtactgtcccctgtg
ctttcagcaccacatttatctcaaaacatgtgtcctgttttggatcttcattcatttgct
gagtcagaatcagaagaagaattttatgatgcactaagcagtcctgtggaagatgtgccg
ttttttgaagtcccatctggttccctcaagcaggccatcagtacaaggcgaaaaacccta
cgcaaacaagaatctttgaaaaatatgacagatttccagctaaagtttgaagtagctgag
gtcttaattaaattatgccgtcttactggtgatactgagatgcctgtgctccagcttgat
attttgggcttaggcactgaaattaaaataagaacatttgacatgactgggaatgccttc
cttcgtgaagttggtcttctgtgcccagagtatattgatgataatgacaagccagtttac
ataattactacattggataatgtagaagatgatcttctcaccctggagtatataaagact
gatattaagggaccagaactgaaaactgcctgtcagaatgttctacagaaaataaaggtg
aacttttcttctctagatgttcatttgcatactgaggctctgctgaatgctattaactat
ctgaataatcttctacctaaacaaggaactaaagttgcagaagaaccagtccatgaaaaa
acagaggagaagaaggatgttcttaaaaaattaacatcaaaaaaatcaaagtgcgaagat
gttattgacctcattatctgtgcagatttatcatgtttgcgtatttttatcagagagaaa
agccatagaatagctgaaattcacattgaaggtctcgatagccaagtgatcatgaagaaa
gcagcaactgatgtgactgcaaaattgaagaacatcattattgtggattctgatgagaca
gcattgtataaaaaggctctttacatcacagaaaaagaagtcttcaacttcagaatggta
tcatatgtgaatgctacagatggcattgcatatacaaatatggatgttgttgacaatcgt
atttacctaactgttgggtgtattcaagtagtttttgtcaacaagtttgtttcatctatt
ttggcttttataaataactttcaagctgccaaggaagctcttactgaggcaactgttcga
acagcagagaaagcagctacaggtgtaaaagagttagcagagcggagttcccgtttggca
ctagatatcaatatcaaagcacctgttgtgataattccacagtcagcaatgtctgcaaat
gtcctggtggctgatcttggtttaatcactgtgaagaaccgattctttattgctaaaaca
aaagcacggtatactctcccacctgttattgactctatgacggtgaaattgagtgaactg
aagttatacagatcttactatgagcaaggttctttgcaaactgaagtacagttgctgcag
ccagtcaatctggaagtagctgttgaacgaaatttagctgctgcatggtataatgaagtt
cctgatattgaaatatctggccgactcaagcctatgaatctaattctcagtcaggaagat
attaccacaatactgaggacactaaatgaaaatgcaggtgaaagctctggtgcatcaaca
gctttgccagaatcaaaagcaccaactagtcattctagtgaaacgcatggtacttctcag
cagtctgcaggtgtaactgttgtgacatcagctgtggtggaattgcattcacctatgaaa
attaaaacaacactaaaactggacttcagatttgactctcttactttagtgttgtatagt
ccaaattcaaaacaggttaacagtttggatcagagagatgaccttttgaagcttgcagaa
tttaaattagttctcatgtcagctgctctgaaaatgttatcagatggttcaatgaatgcg
tcagtcaaactggcaaactgtacattagatgataaaagacagtcaatccagaaggctaca
ccaagaatggtggaaatgaaacatggatttgaaaaaaaagttatggtggatgtaaactac
aaacaggggagagatggcactgttcttgatgttattgttcaagagatatacctttgtgca
agcatggagtttctacttactgtagcagatatattcctaaaggctaatgcagaaagtgct
gctgcacagagaaatctcaagcagtcattaccatcaaaggaccaagcatctgtgcagcct
gtatctacgatggaagtgaacattgttgttaaaaatccagagattgtgtttgtggctgat
ttaacaagaagtgatgctcctgcgctggtggttacaacacagtgtgaggtcttcattaaa
agtagccctgaaaggtacagcatgacagctgctgttagagagatacagatgaaagcatgc
ccatttcttccagaagaaaggaaagggaacattactacggtattgcagccttgtgacttc
ttctttgaaatgaaacagtcaggaactaatccacagacagctgatctaaccattaaatct
ctaacaatagaagtttcaccaataatcataaacacagtaattactattacatcagctctt
tatcaaactacagaagcaacaaaagaagagattagtcaaattcctcctgatttgtggaat
aagaaagatataaaaaacctgaaaatgtggtttctagaagagactaatgaaaatgaagat
aaaaatccaaacacagaactggttcccacaggagagtcattgaaaattaatatagaatct
gtttttctaacacttgaagctggggttgggcacagaacagtgccaatgcttttagccaag
tcctcatttactggagaagtcaagaactggagtactctaatcaacctacattctcgtctt
gagctagaggtacattattttaatgagatgtttggtgtgtgggagcctttgcttgaacct
ctagaagttgagaagactgacttattcaagccatggactcttgaaatcaagatgaagaag
gctaaaaaagcactgtttgaatcagatgatgaagaagaagagaactacaaagttccagaa
tataaaacagtaataaatgtttcctcaaaagaccagctgaacattacactgtcaaagcta
ggactgcaaatgttgagtaacttgggcacggcatttgctgaagcagctagtcaaacttca
gacatcttcaaaaaagaccgagcaccatttgtagtaataaattctttaggagttcctatc
acagtctcgcctagtgattcctttagtgtccttaatgttgaatttggagcaaaaatattt
catttagaagacaaagagagtttaaatatggaatttgtcagaactagaaatgagagtgac
cagttcacagcaatgacaaccctgtgtagcaagagattttacattcagatctgtcctcat
aatcattctgctgtggagaagattccattgactaaagtgggtcgatgtatttacaaagtg
agacacgaggaatcaggcgttgagaggtcaattgtcagtcaaattgacacggttgaagga
agcaagatgataactatacgttcccctgttcagataaggaatcacttttcaatcccgtta
aatgtttttgaggaaggaagatgtttagggactgcttcaccagcaaatgaattcaacata
cccttttcttcttacagatccatactgagtttgcaaccactagccagtgaaaacggagtg
ggtggagaatatgatatgtgtgaaggaattacatttgatgaaattatgaaaaatgttgat
ggtttgttacaaaggaaatgccagtctgtgaggtcaactaaccactcacttatcatcaat
attgttcctgtaaaagattcattgacaacttcattaagtgcagaagatgaatgggatttt
ccatatgttgttcatttatggccttctgttcttctccgcaatcttcttccttaccaaata
acttattccgtggagggaaatgggaacaaatatgacactctacaagaaggatgttcagcc
cagattcataatgcagtcttggaccaaacaaaactagatttgcagttgcttaactatctt
gatcaaaactggagaagcgagtaccagataaaaagcaatctccctgatatcagcttcacc
acatttcactgtgtcacagagctggataagactgaactggatattgctgttcatgtgacc
tacacaactgggcagatgataatagcaattcacagtccttactggatggtgaataaaact
ggtcgaatgttacagtacaaagcggatggtattcaccgcaagcatcctccagattacaaa
aaacccctccttttttctttccagcctaaaaacttccgtcaaaataacaaggtgcagctt
agggtaactgacagtgaactgtctgatcagttttctctggacactgttggaagtcatggt
tctgtgaaatgcaagagtcataaaaaggaatatcaagttggtgtcaccataaacaatagc
agtttcaatattactagaattgtaaccttcactccattttttatgatttcaaatagaagt
aaatacactttggaggtagctgaagaaggcaaggaaaagtggattcccattgttttgcaa
cagtgtattcccttttggcctgaaaatgatgccaacaaactgcttgttagagttgaaaat
tctgatctccctccaaagaagataaattttgatcagcaagaaagctgtcttttactgcat
ttggacaataagcttggaggaattgcagtggatgttaatctgactgaacattctacggtg
attaccttttctaattaccatgatggtgcagctccatttctgttgattaaccataccaaa
gaggaaattattgagtacggacaaagctccctcggtgaattggaagactgccttcagcca
gataaggcagtgttgtatacttgggcagacccaacaggatctaggaaattgaaatggaga
tgtggaaatagaactgaggaaatttccccaaaagaggacaaaatggaaataatcagtgtg
gattctagaaaagcggtctatttaatgtcgttttatgaaggtttgcagcgtattgtcctc
atcactgaagatgagaatgtatttaaattgacatatgaaagcgtaaaagcagaactagca
gaacaagaaattgttctgtctttgcaagatgttggaatttcattggttaataattataca
aaacaagaggtgtcctacattggaattacaagttctgatgtggtgtgggagacaaaaccc
aagaagaagtcaagatggagaccaatgagtgttaagcaaattgataaattagaacaagaa
ttcagagattacaatgagctaagtccttcagaaaataagatcattgagttggaatctaat
gttttggtatgtttaactcctaatggagtgaacatgaagattcaacagccaaatgagatt
cctatcagaagaaattatctgccagctttaaaagtggaatacagttcctctgcacatcag
aagtctttcagaatccaaatttacaggatacaaatacaaaaccagattcctggagccata
tttccctttgtgttctaccctattaaacctccaaagtccatcaccttggattcagcacca
aaaccatttactgatgtcagtattgtcatgagaactgctggacactcacagatatctcat
attaagtattttaaggttctgattcaagagatggatctcagattagatcttggcttcctg
tatgcaattggtgaattctttacacagactgatgtgccaagtgaccaagagctacaactt
ttcaaaaaggatgttgaatctcttcaagaagaactaatgagtgtgtcatcaatggataca
tcacaaatcagcttgtatgaatactttcatatctctccaattaagttacacttgagcttt
tcactcagtacgggtggagaagatagtaacaaagaagagagaaagaatgaattgatacca
tttcagtccctgaatctcctgctgaagagtataggggcgacccttacagatgtacaagat
attgtctttaagttggcattctttgagctcaggtatcacttctgtactacacagcagctc
cagtcagcagttgtaaggcattattcaaaacaggctattaaacagatgtatattcttatt
cttggccttgatgtgttgggtaatccatttggtttcataagaggcttgtctgaaggagta
gaagctttcttctatgaaccataccagggagccatccagggtcctgaggaatttatagaa
ggaatggcactaggatttaaagcactggtagggggagctgttggtggattagcgggagct
gcctcaagaatcacaggtgctatggcaaaaggagtcgctgcaataactatggatgaggat
taccagcaaaaaaggagagaagctatgaataaacaacccactggtctgagagagggtatc
actcgtggtggaaaaggactagtttctggttttgtaagtggcataacaggaatagttaca
aaaccaataagaggagctcaggaagaaggagcagctggttttttcaaaggtgttggaaaa
ggcttagtgggagcagtagctaggcccactggtggaatcatagatatggcaagcagcaca
tttcagggtattaaaaaggttgcagattcatcagaagatgtgataagcctgcgcccacct
cgcttctttggtgaagatggagttattagaccttacaggttaagagatggaactggaagt
caaatgttacagaaaattgaaaatggaagatttgcaaaactcagatatattgcacatgct
atggtcaacagtacagatctgttaatggtaacaaaaagtggtgtgttatttgtgacaaaa
ggggcatttggacagctgacatgtgaatggcagtacacttatgatgaattcaccaaagaa
ccattcatcattgatggtcgaagattgcgcatagaagccaaggaacgagttaagtctgtc
ttccatgccaaagaatttggaaaaattataaattttagaagtccagaggatgctaagtgg
atcctgtctaaactagaagaagtacgagagaatcagccaaaattgtaa
DBGET
integrated database retrieval system
