Pseudopodoces humilis (Tibetan ground-tit): 102104034
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Entry
102104034 CDS
T02921
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102104034 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phi03400
]
102104034 (MSH6)
DNA repair and recombination proteins [BR:
phi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102104034 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
102104034
NCBI-ProteinID:
XP_005523320
LinkDB
All DBs
Position
Unknown
AA seq
1260 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRIHVQFFDDCPTRGWISVKYLKPYKGSSDGET
MKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCNEPSDTEEEEEEMEEMSENASGN
SEDCNSEEDVKSSKRAMSRERAIKAKRRRVLDSDSDHDGSDVEFKPDGKEAASSEEASSG
VDENESSDTETESVAESPVKVPSKRKRREVKKPAKRSSLGNECSETPKRAATVSSEAKSK
LTSFAAPESFESQASACSGGTGGFSVWEHEKLDWLQEGKRKDAHRRRQGDPDYDPCTLYV
PEDYLNKCTPGVRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLVYMKGTWAH
SGFPETAFGRFSDVLVQKGYKVVRVEQTETPEMMEARCKSTGHSTRFDKVVRREICRIIT
KGTQTYSVMDCDPSENHSKFLLCVKEKEDSAGTRVYGVCFVDTSVGKFHIGQFPDDRHCS
RFRTLIAHYTPVQVLFEKGNLTVDTQKILKGSLVSCIQEGLTSGSQFWNASKTLKVLLEE
GYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLIDQEL
LSQANFEEYVPVDIAAAKNMSSSSLFARTGQRMVLDGVTLMNLEVLQNGTNGTTEGTLLE
RIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSEHLKKLPDLER
LLSKIHSIGSPLKSQNHPDSRAIFYEELKYSKKKIADFLSALEGFKVINEIVDLMEEVAS
DFKSRVLKQLVTRKAKNPDGRFPDLSAELTRWDTAFDHNQARKTGVITPKAGFDPDYDGA
LQDIKSVDEDLRKYLDKQRKLLGFKSVQYWGTGKNRYQMEIPESAVSRNLPEEYELRSSR
KGYKRYWTKEIEKMLAVMVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVLDVL
MSLAHYSQGGDGPLCRPVILLPMDNAPPFLELRNSRHPCITKTFFGDDFIPNDIVIGIKD
EGSSSEASCVLVTGPNMGGKSTLMRQAGLLVVMAQLGCYVPAETCRLTPIDRVFTRLGAS
DRIMAGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVQELAERIR
CRTLFSTHYHSLVEDYSHRGAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSYGF
NAARLADIPEEVIQKGHRKAKEFEKTTISLRIFRYLCQVVDGTNTDANAVQKLMAMISRL
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccctggtggccgtgtctcatatacaaccaccccactgaaaggacaata
gtcagaggaaaaggaaaatccactcgtatccatgtgcagttcttcgatgactgccccaca
aggggttggatcagtgttaaatacctgaagccatataaaggttcatcagatggagaaact
atgaagggaggtatgttttacagcacaaagcctgaaattaaaagagccatggtgctggca
gatgatgccatgagcaaagataaaaccaagaggcttgaactggcagtatgcaatgaacct
tcagacacagaggaggaagaggaagaaatggaggagatgagtgaaaatgcatcaggcaac
agtgaagactgcaatagtgaggaggatgtgaaaagcagtaagcgagcgatgagcagggaa
agggctataaaagccaagaggaggagagtgttggattctgacagtgaccatgatggctct
gatgtggagttcaagcctgatgggaaagaagcagcaagcagtgaggaagccagtagtggg
gtggatgaaaatgagtcttctgacacagagacagagagtgttgcagagagccctgtaaaa
gtcccttctaaacgaaagaggagagaggtgaaaaagcctgctaaaaggagtagcttggga
aatgaatgttctgaaacgcccaaaagagcagcaacagtctcctcagaagccaagtctaag
ctgacatcgtttgcagcacctgaaagttttgaatctcaagcaagtgcttgcagtggaggc
actggtggcttctcagtgtgggaacacgaaaagcttgactggctgcaagaagggaagagg
aaagatgcgcacaggaggcgtcagggtgaccctgattacgacccctgtactctctatgtg
cctgaggattatctcaacaagtgcacgccgggcgtgcggaggtggtggcagctcaaaagc
caaaactttgatgctgtgatttgctacaaggttggaaagttctacgagttgtatcacatg
gatgcagtcactggtgtgaatgagttgggcctggtctatatgaagggcacctgggcccac
tcaggttttccagaaactgcctttgggcgattctccgatgtcctggtgcagaagggctac
aaggtggtgcgtgtggagcagacggaaacgcctgaaatgatggaagcacgctgcaagtca
acgggccactccaccaggtttgacaaggtggtgcgccgggagatctgcaggatcatcacc
aagggaacccagacctacagcgtcatggactgcgacccctccgagaaccacagcaagttc
ctgctgtgcgtgaaggagaaggaggactcggccgggacgcgcgtgtacggggtctgcttc
gtcgacacctccgtggggaagttccacattggccagttcccagacgaccgccactgctcc
aggtttaggactttgatagctcattacacccctgtgcaggtgctgtttgagaaggggaac
ctgactgtggacacacagaagatactgaagggctcgcttgtttcttgcattcaggaaggg
ctgacctcgggttcccagttctggaatgcttctaaaacactaaaagtccttcttgaggaa
ggatatttcaaggagaagcagaattctgaaaatggatgttctctgccctccgtaatcaaa
tctctgacttcagagagtgactccctgggattaactcctggtgaaaacagtgagttagct
ttgtcagctcttgggggctgtgtcttctatctcaaaaaatgtctgattgatcaggagctg
ttatcccaggcaaacttcgaggaatatgtccctgtggatattgctgctgcaaaaaacatg
agttcaagtagtttgtttgccagaactggccagcggatggtgctggatggagttaccctg
atgaacttggaagtcctgcagaatggaaccaatggaaccacagaaggtactttgttggaa
aggattgattcttgttgtacaccattcgggaagcgactactaaaacagtggctctgcgct
ccgctttgtaatcctaaatccatcaatgatcgtttggatgctgtcgaggacctcctggca
gtgccagataaaatgtctgaagtcagtgagcacctcaagaaactgcctgaccttgagaga
ctgctcagcaaaattcacagcatcgggtcaccactcaaaagtcagaaccatcctgacagc
agggccatcttctatgaagaactcaaatacagcaaaaaaaaaatagctgactttctgtct
gccctggagggattcaaagtaattaatgaaattgttgatctcatggaggaggttgccagc
gacttcaaatccagagtcctgaagcagctggtcacccgcaaagccaaaaatcccgacggc
cgcttccccgacctgagtgcagagctcaccaggtgggacactgcctttgatcacaaccag
gctcggaagacaggagtgattaccccaaaggcaggttttgaccccgattatgacggagca
ctacaggatatcaaaagtgtcgatgaagatcttcgcaagtacctggataagcagcgcaag
ctgctcgggttcaaatccgtgcagtactgggggacaggcaagaaccggtaccagatggaa
atcccggaaagtgccgtatctcgtaacctgcccgaggaatacgagctgaggtcgagcagg
aagggctacaagcgctactggaccaaggagatcgagaagatgctggctgtgatggtgaac
gccgaggagcgccgcgacgccgccctcaaggactgcatgaggcgcctcttctacaacttc
gacaagaacagcaaggactggcagacagctgtggagtgcattgctgtgctggatgtcttg
atgtcccttgctcactacagtcaaggtggtgatggacccctgtgccgacctgtaatcctg
ctgcctatggataatgctcctcccttcctggaacttcgaaattcccgccatccgtgcatc
acaaaaactttctttggggatgattttattcccaatgacattgtaattggcatcaaggat
gagggcagcagcagtgaggcttcctgtgtgttggtaactggcccaaacatgggtggcaaa
tccacgctcatgagacaggctggtctcctggtggtcatggcccagctggggtgctacgtg
cctgcggaaacctgcaggctcacgcccatcgaccgcgtgttcacacggctcggcgcctct
gacaggatcatggctggtgaaagtaccttctttgttgaattgagcgagacttccagcatt
ctgcagcatgcaacagagcattcccttgttctcgtcgatgaactgggcagaggcacggcc
acgtttgacggaacagccatagcgagcgcggtggtgcaggagctggcggagaggatccgg
tgccggacgctcttctccactcactaccactccctggtggaggactattcccaccgcggg
gccgtgcgcctgggccacatggcatgcatggttgaaaatgagagtgaagacccaagccag
gaaacaattacgttcctgtacaagttcattgaaggagcctgcccaaagagctatggcttc
aacgcggcaagacttgcagatattccagaggaagtcattcagaaggggcatagaaaagct
aaagagtttgaaaaaacaaccatctcactgagaatatttaggtacctgtgccaggtggtg
gatggaacaaacactgatgcaaacgccgttcagaaactcatggcgatgatcagccggctt
tag
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